CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31650	Canola	nucleus, plastid	57.61	60.56
AT2G34920.2	Thale cress	nucleus	39.59	40.24
CDY02344	Canola	cytosol	35.45	34.88
CDY12454	Canola	nucleus	32.64	34.26
CDY09519	Canola	nucleus	35.75	33.75
CDY52188	Canola	nucleus	33.09	32.7
GSMUA_Achr4P33210_001	Banana	nucleus	17.87	22.28
VIT_01s0010g00340.t01	Wine grape	nucleus	23.63	21.95
CDX96975	Canola	cytosol	21.57	21.25
CDY14941	Canola	nucleus	17.87	19.48
KRH37161	Soybean	nucleus	26.44	19.41
CDY50063	Canola	cytosol	30.58	18.84
KRH12155	Soybean	nucleus	24.96	18.43
CDX78978	Canola	cytosol	30.43	18.2
GSMUA_Achr7P00390_001	Banana	nucleus	18.91	17.61
HORVU2Hr1G048520.1	Barley	plastid	16.69	17.57
Solyc10g005220.2.1	Tomato	nucleus, plastid	24.37	17.52
TraesCS2B01G251300.1	Wheat	nucleus, plastid	18.17	16.76
TraesCS2D01G233500.1	Wheat	cytosol, plastid	18.61	16.64
TraesCS2A01G229600.2	Wheat	nucleus, plastid	18.17	16.64
Os07t0499800-01	Rice	nucleus	18.17	16.36
EER99396	Sorghum	plastid	18.32	16.06
PGSC0003DMT400029374	Potato	nucleus, plastid	23.19	15.92
Zm00001d006417_P002	Maize	plastid	13.15	15.16
PGSC0003DMT400035458	Potato	nucleus	23.04	15.07
Zm00001d021532_P001	Maize	cytosol, plastid	17.13	15.01
Solyc02g082100.2.1	Tomato	vacuole	22.16	13.91
CDY41355	Canola	nucleus	9.31	8.37
CDY00948	Canola	cytosol	8.57	8.04
CDY08599	Canola	nucleus	8.57	8.02
CDY44857	Canola	nucleus	8.86	7.72
CDX70223	Canola	cytosol	8.71	7.61
CDY04520	Canola	cytosol, plastid	7.53	7.52
Os03t0107500-00	Rice	plasma membrane	2.22	4.11
CDX71406	Canola	cytosol	3.1	3.76

Protein Annotations

EnsemblPlants:CDX84276	EnsemblPlantsGene:GSBRNA2T00141361001	Gene3D:3.30.40.10	GO:A0A078D4J8	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	PFAM:PF13920
PFscan:PS50089	ProteinID:CDX84276	ProteinID:CDX84276.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF57850
UniParc:UPI0004EDDF9E	MapMan:35.2	:	:	:	:

Description

BnaC04g10380D

Coordinates

chrLK031836:+:1328878..1331447

Molecular Weight (calculated)

76969.3 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.805

Length

677 amino acids

Sequence
(BLAST)

001: MLFVFVFLIV NAMASSQFEI ASLRSNFGCI ILRDRNQRQN NHDAVFKKNP KKKNKSRLGS PEKPRTGKGN DFSDSTKRND KRGGASSLVQ IWEARLNRSS
101: AGNSSPVHGQ ATESVQEETN LSAPPIDGES ESENESKNND PTVEIESGAL GTVSDSGESK WGRVAEIIRK LKLTAGDNVG AADVLNVKTP KQEKSSFPVV
201: TCSPRLRGRQ AFSDLLMRLE RDRHRELESL AGRNAVSKFT QRGRLQSMLR LRTLKRGLVI QDRHLSSAKT PDLSRFEFGS TVVNLRERFG ANATSEAERK
301: KRQETTLEIE RSTESMKPKD TTILLETSST ERLSPRNHKI EEANSRNKET EAKMSYRQLQ ETTVQEALKR KTDNTSPHTI VTLQEPRTLE KEVANIVESR
401: TYGTHETPFL ESQETSFVWE YQEEYEDEQS YYGEMSSDWF TEISRPRTYW EDLRKSRYLE VMNTRSDKDD ICRLLERRTV SDFLQSELRE KIDKLMISRV
501: QTHPVQRIEE AGKEEQECDI GQGEDEDDEE VRDDLSHTSS QLFAPSPAGS WSSQDIGVSS TPDLSPLHTP QSTEMEIISE LRTQILQLQL DMSELRDSVK
601: TCLDVNATLQ KSVHRENPLK RKCFVCNESQ VETLLYRCGH MCTCLRCANE LQCNGGKCPI CRAKILDVVR VFLDSST

Best Arabidopsis Sequence Match ( AT2G34920.2 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.