Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 57.71 | 60.4 |
| PGSC0003DMT400035458 | Potato | nucleus | 29.41 | 28.02 |
| Bra005381.1-P | Field mustard | nucleus | 17.04 | 25.93 |
| CDY31650 | Canola | nucleus, plastid | 16.84 | 25.78 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 16.23 | 25.68 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 18.97 | 25.65 |
| AT2G34920.2 | Thale cress | nucleus | 17.24 | 25.53 |
| Bra039871.1-P | Field mustard | nucleus | 17.95 | 25.21 |
| CDY02344 | Canola | cytosol | 17.34 | 24.85 |
| CDY52188 | Canola | nucleus | 17.14 | 24.67 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 12.98 | 23.57 |
| CDY12454 | Canola | nucleus | 15.42 | 23.57 |
| Bra023148.1-P | Field mustard | nucleus | 16.73 | 23.4 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 15.92 | 23.19 |
| CDY09519 | Canola | nucleus | 16.84 | 23.15 |
| AT1G30860.1 | Thale cress | cytosol | 16.33 | 22.05 |
| KRH37161 | Soybean | nucleus | 20.49 | 21.91 |
| KRH12155 | Soybean | nucleus | 20.18 | 21.7 |
| HORVU2Hr1G048520.1 | Barley | plastid | 13.18 | 20.22 |
| CDX96975 | Canola | cytosol | 14.0 | 20.09 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 14.6 | 19.81 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 13.89 | 18.66 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 14.4 | 18.37 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 14.1 | 18.36 |
| EER99396 | Sorghum | plastid | 14.1 | 18.01 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 13.49 | 18.0 |
| CDY14941 | Canola | nucleus | 10.95 | 17.39 |
| CDY50063 | Canola | cytosol | 19.37 | 17.38 |
| CDX78978 | Canola | cytosol | 19.78 | 17.23 |
| Zm00001d006417_P002 | Maize | plastid | 10.14 | 17.04 |
| AT5G44690.1 | Thale cress | nucleus | 11.36 | 16.92 |
| Os07t0499800-01 | Rice | nucleus | 12.88 | 16.89 |
| Bra013447.1-P | Field mustard | nucleus | 19.78 | 15.78 |
| AT4G20160.2 | Thale cress | cytosol | 19.27 | 15.66 |
| PGSC0003DMT400018447 | Potato | nucleus | 8.62 | 11.14 |
| PGSC0003DMT400070376 | Potato | nucleus | 8.01 | 9.14 |
| PGSC0003DMT400043571 | Potato | nucleus | 7.61 | 8.73 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 6.8 | 7.75 |
| Os03t0107500-00 | Rice | plasma membrane | 1.22 | 3.29 |
Protein Annotations
| EntrezGene:102583220 | Gene3D:3.30.40.10 | MapMan:35.2 | ncoils:Coil | InterPro:IPR001841 | InterPro:IPR013083 |
| UniProt:M1ASP8 | PFAM:PF13920 | EnsemblPlantsGene:PGSC0003DMG400011288 | PGSC:PGSC0003DMG400011288 | EnsemblPlants:PGSC0003DMT400029374 | PFscan:PS50089 |
| PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | SUPFAM:SSF57850 | UniParc:UPI0002969C02 | RefSeq:XP_006352650.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400011288]
Coordinates
chr10:+:250823..256969
Molecular Weight (calculated)
110756.0 Da
IEP (calculated)
6.399
GRAVY (calculated)
-0.893
Length
986 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSQVEIAS SSPFGYVLNN RCCGTSTRDS NSFKQNFKNL VQSHLHSCKA FPSDSCENSQ NNVDLFICKK TEFGGKNQES CGGGVSSLVR KWKDFETESK
101: SLNLVNNYEN LGFVCDESCS IMMKSECDWE SDDKTDISKD SDSDVKESER LGVADIIKKL KFDNGGNVVV AAVNGGSSLP RVRTSSIKDH SEGQRCNFSP
201: VLSSPRFIRG RQAFSDLLLQ MERDRKRELE GLVERKTVSK FQQRGRIQAL LRVRLIRHGA EVRGGHSVKC SASEPNKSKH SAIMHLREKF NTVGQHGLAV
301: SRNTSKEVAE SIHESGSLPS TPNRQQKENS YRDFKSLRSH QRELVRSNSA KVGTGFSLHQ QKEEDPLKGH VKERAGLQPG VLADSISTSI TLGDNTRDPS
401: ISKKENHHKP RSPHKEAVDN KPKVGIIAIS NQLQEENHHE EVPEQVSPRN VAPSIQVGNR FSSHQQGEGD RHKELVREGA EMQPGTASGE KARDPCTSKE
501: ESHHKPRNNH KEVVDNIPKV GTFCISNQPC EENHYEELCK KLSSRNMATS IQVTNLPENQ KEMACSAKKS EGSCILNQHD MNLTSLPSYT CQAQSLDDIP
601: EKASWGNTSS EASHSNFLDF VDSGRPPKHR GENKQFPGTS DCTNPQSYRE EEATNQCLVE SYSGSVSDYS LTTSGWDELQ SNYQQDNEDW ISYISRPRKE
701: WEGLRQERYQ EMLDPFSNNH DIQQLLHRKS VSVFLTSGLR EQIDRIMASR SQQLPNARSS HVEKQVPAQV AEDEEEEEVE QNAKEEEVEW GYNDDSEDDN
801: IPSRQRYDEP EVLILQNTSS QSWNTNPYQE VTDDSYHFPS PSSLQSQSSN IYSQPCSSST GHPATEMELI YEMRGHMEQL HQEIFEIRRS MKSCMNMQMK
901: LQHSIKQDVA AAISQLGQNS RGNSDKKGSN NGKCCICNEE PVDSLLYRCG HMCTCFLCAH ELISGIGKCP ICQTPIMDVV RAYAHS
101: SLNLVNNYEN LGFVCDESCS IMMKSECDWE SDDKTDISKD SDSDVKESER LGVADIIKKL KFDNGGNVVV AAVNGGSSLP RVRTSSIKDH SEGQRCNFSP
201: VLSSPRFIRG RQAFSDLLLQ MERDRKRELE GLVERKTVSK FQQRGRIQAL LRVRLIRHGA EVRGGHSVKC SASEPNKSKH SAIMHLREKF NTVGQHGLAV
301: SRNTSKEVAE SIHESGSLPS TPNRQQKENS YRDFKSLRSH QRELVRSNSA KVGTGFSLHQ QKEEDPLKGH VKERAGLQPG VLADSISTSI TLGDNTRDPS
401: ISKKENHHKP RSPHKEAVDN KPKVGIIAIS NQLQEENHHE EVPEQVSPRN VAPSIQVGNR FSSHQQGEGD RHKELVREGA EMQPGTASGE KARDPCTSKE
501: ESHHKPRNNH KEVVDNIPKV GTFCISNQPC EENHYEELCK KLSSRNMATS IQVTNLPENQ KEMACSAKKS EGSCILNQHD MNLTSLPSYT CQAQSLDDIP
601: EKASWGNTSS EASHSNFLDF VDSGRPPKHR GENKQFPGTS DCTNPQSYRE EEATNQCLVE SYSGSVSDYS LTTSGWDELQ SNYQQDNEDW ISYISRPRKE
701: WEGLRQERYQ EMLDPFSNNH DIQQLLHRKS VSVFLTSGLR EQIDRIMASR SQQLPNARSS HVEKQVPAQV AEDEEEEEVE QNAKEEEVEW GYNDDSEDDN
801: IPSRQRYDEP EVLILQNTSS QSWNTNPYQE VTDDSYHFPS PSSLQSQSSN IYSQPCSSST GHPATEMELI YEMRGHMEQL HQEIFEIRRS MKSCMNMQMK
901: LQHSIKQDVA AAISQLGQNS RGNSDKKGSN NGKCCICNEE PVDSLLYRCG HMCTCFLCAH ELISGIGKCP ICQTPIMDVV RAYAHS
001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
Arabidopsis Description
EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.