Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083190.1.1 | Tomato | plastid | 95.42 | 94.55 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 61.22 | 60.94 |
| KRG96225 | Soybean | nucleus | 60.0 | 60.0 |
| KRH67971 | Soybean | plastid | 59.54 | 59.09 |
| CDY01038 | Canola | plastid | 52.82 | 56.72 |
| CDY08511 | Canola | plastid | 53.13 | 56.59 |
| Bra034827.1-P | Field mustard | plastid | 52.98 | 56.51 |
| AT3G11590.1 | Thale cress | plastid | 52.98 | 55.79 |
| Bra001412.1-P | Field mustard | nucleus | 28.7 | 54.18 |
| CDX73866 | Canola | cytosol | 28.4 | 50.41 |
| CDY56601 | Canola | cytosol, golgi, plastid | 28.09 | 49.86 |
| PGSC0003DMT400067737 | Potato | nucleus | 36.34 | 41.68 |
| PGSC0003DMT400015076 | Potato | nucleus | 31.3 | 36.03 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 31.76 | 33.71 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 26.87 | 30.72 |
| EES11990 | Sorghum | nucleus | 25.5 | 29.4 |
| Os02t0506100-00 | Rice | plastid | 19.54 | 29.36 |
| Zm00001d003996_P001 | Maize | nucleus | 25.34 | 29.17 |
| Zm00001d025208_P002 | Maize | nucleus | 25.5 | 28.5 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 22.14 | 28.49 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 25.04 | 28.37 |
| Os04t0382800-00 | Rice | nucleus | 24.73 | 28.37 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 23.97 | 28.19 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 24.89 | 28.15 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 24.73 | 27.98 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 24.12 | 27.92 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 23.97 | 27.74 |
| KXG30263 | Sorghum | mitochondrion | 24.12 | 25.4 |
| Zm00001d000402_P001 | Maize | mitochondrion | 20.46 | 24.45 |
| PGSC0003DMT400071667 | Potato | nucleus | 22.75 | 21.88 |
| PGSC0003DMT400057488 | Potato | nucleus | 23.05 | 21.82 |
| PGSC0003DMT400032084 | Potato | nucleus | 22.29 | 21.53 |
| PGSC0003DMT400042430 | Potato | nucleus | 18.78 | 19.59 |
| PGSC0003DMT400000259 | Potato | nucleus | 19.39 | 19.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072353 | EnsemblPlantsGene:PGSC0003DMG400028158 | EntrezGene:102579674 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 | PGSC:PGSC0003DMG400028158 | RefSeq:XP_006339147.1 |
| SEG:seg | UniParc:UPI00029664A8 | UniProt:M1CQ48 | MapMan:35.1 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028158]
Coordinates
chr10:-:55923292..55926893
Molecular Weight (calculated)
73470.7 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.891
Length
655 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRQNQAMVE GLIPKIRKRG CSSSSSASSK VYNYRFKRAI LVGKSRNGLG LGFGLRGSRS NTPVPSWRAT PLRNVVESPK QSLGGGISQP VSARKLAATL
101: WEMNEMPSPR MTEEDLEKKK KMMMKKEKIR AGHMSSGSVS GSLPPHLCDP SHSPVSERMD RSGTGSYQKR SSTTSRRPRT TDHNVGMLDS LSSASFMELE
201: TRSRAQTPRG SVTGFGSRLK DVSNALTTSK ELLKIINRIW AHADQPSSST SLVSVLHTEL ERARLQVNQL IQDQRSDQNE INYLLKCFAE EKAAWKNKGQ
301: QAVEAAIESV ANELEVERKL RRRFESLNKK LGKELSDSKA SFVKVVKELE SEKRAREVME QVCDELARDI DEDKAEAEEM KRESAKVQEE IEQEREMLQL
401: ADRLREERAH VKLSEAKNHF EEKNSAIDKL RKQLEGFLGK KKTKGKRNGS LNFRNNEDTA SLSIEKDNDG EVENVADCGE DSAESDLHSI ELNMDNSNKS
501: YNWAYPSNVV RESKRISVDE RRARNSIAGQ PRRSTPIQRS ISGGVVEYVN QAANLPTSGD GLDRERLHEL EKLGQRYSYL DEAQRLKAVK GLKDHLIASS
601: GTGSCKDISS PIRQWEQPWP SRDPCGTIQE KSSIIQGSAT KSRLGEGQSV RRSRR
101: WEMNEMPSPR MTEEDLEKKK KMMMKKEKIR AGHMSSGSVS GSLPPHLCDP SHSPVSERMD RSGTGSYQKR SSTTSRRPRT TDHNVGMLDS LSSASFMELE
201: TRSRAQTPRG SVTGFGSRLK DVSNALTTSK ELLKIINRIW AHADQPSSST SLVSVLHTEL ERARLQVNQL IQDQRSDQNE INYLLKCFAE EKAAWKNKGQ
301: QAVEAAIESV ANELEVERKL RRRFESLNKK LGKELSDSKA SFVKVVKELE SEKRAREVME QVCDELARDI DEDKAEAEEM KRESAKVQEE IEQEREMLQL
401: ADRLREERAH VKLSEAKNHF EEKNSAIDKL RKQLEGFLGK KKTKGKRNGS LNFRNNEDTA SLSIEKDNDG EVENVADCGE DSAESDLHSI ELNMDNSNKS
501: YNWAYPSNVV RESKRISVDE RRARNSIAGQ PRRSTPIQRS ISGGVVEYVN QAANLPTSGD GLDRERLHEL EKLGQRYSYL DEAQRLKAVK GLKDHLIASS
601: GTGSCKDISS PIRQWEQPWP SRDPCGTIQE KSSIIQGSAT KSRLGEGQSV RRSRR
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.