Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033950.2.1 | Tomato | nucleus | 76.36 | 89.53 |
| HORVU7Hr1G104590.1 | Barley | cytosol | 9.46 | 65.06 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 53.42 | 63.54 |
| CDY69127 | Canola | cytosol | 6.65 | 61.29 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 9.63 | 56.7 |
| Bra033870.1-P | Field mustard | nucleus | 50.96 | 53.1 |
| CDY35525 | Canola | nucleus | 51.31 | 53.08 |
| KRH48143 | Soybean | nucleus | 52.01 | 52.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.21 | 51.94 |
| AT1G31870.1 | Thale cress | nucleus | 49.21 | 50.09 |
| CDY29914 | Canola | nucleus, vacuole | 50.96 | 48.58 |
| Zm00001d048133_P001 | Maize | nucleus | 45.01 | 48.4 |
| Os08t0178300-01 | Rice | nucleus | 46.41 | 48.01 |
| KXG19224 | Sorghum | nucleus | 46.94 | 45.27 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 44.66 | 45.21 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 44.66 | 44.27 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 45.01 | 41.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058162 | EnsemblPlantsGene:PGSC0003DMG400022576 | EntrezGene:102597053 | InterPro:Bud13 | PFAM:PF09736 | PGSC:PGSC0003DMG400022576 |
| RefSeq:XP_006343392.1 | RefSeq:XP_015162364.1 | SEG:seg | UniParc:UPI0002958BBA | UniProt:M1C269 | MapMan:16.4.5.2.10 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022576]
Coordinates
chr3:-:4189493..4196084
Molecular Weight (calculated)
65179.5 Da
IEP (calculated)
10.455
GRAVY (calculated)
-1.392
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAPSSTSTS LKEYLKKYES NTNEEGKKKQ KKKKKVKPND VKGVVVVDED PVWQKPVKIE DEEDESADEE LPQVNEDIEV KRMKRLEQIR ARRPFGSVSE
101: DGSGWVSVSS TSNDQISDLS PTRKRPGRND SPSPDPQLNP SSPAADLSPP RKPRARNDTP SPESGRKQPR TQEGDLSPPR KRSARNDTQR TRIRTPSPEP
201: QLKPSSAKDA DLSPPRKRRV RNDTPELEMK PLSTRDADIS PPRRQRARND TPESDMKSLR SRDTDISPPR RRRTRNDTPS PEPKARPSAD LSPPRRRQKY
301: GQSLSDISDV SPPRRGSRAQ GDSRADQATD LSPLRKKKAQ NALEARLDSS TTKQGPKTGL VSGKDIKEEI DRTKKEDWMR FQEMDPLVSG RGAEPVYRDK
401: ITGQRMSKEE FLKSKKKKEE KEKPKEIKLE WGKGLAQKRE MEVRLQELES EKDKPFARSR DDPELDTMLK ERVRWGDPMA HLVKKKLDPI LPDFGANEKM
501: KDSGFIIPQD IPSHSWIKRG LDAAPNRYGI RPGRHWDGVD RSTGYEKELF KRTNEKQATE KEAYLWSVSD M
101: DGSGWVSVSS TSNDQISDLS PTRKRPGRND SPSPDPQLNP SSPAADLSPP RKPRARNDTP SPESGRKQPR TQEGDLSPPR KRSARNDTQR TRIRTPSPEP
201: QLKPSSAKDA DLSPPRKRRV RNDTPELEMK PLSTRDADIS PPRRQRARND TPESDMKSLR SRDTDISPPR RRRTRNDTPS PEPKARPSAD LSPPRRRQKY
301: GQSLSDISDV SPPRRGSRAQ GDSRADQATD LSPLRKKKAQ NALEARLDSS TTKQGPKTGL VSGKDIKEEI DRTKKEDWMR FQEMDPLVSG RGAEPVYRDK
401: ITGQRMSKEE FLKSKKKKEE KEKPKEIKLE WGKGLAQKRE MEVRLQELES EKDKPFARSR DDPELDTMLK ERVRWGDPMA HLVKKKLDPI LPDFGANEKM
501: KDSGFIIPQD IPSHSWIKRG LDAAPNRYGI RPGRHWDGVD RSTGYEKELF KRTNEKQATE KEAYLWSVSD M
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.