Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35525 | Canola | nucleus | 87.15 | 94.57 |
| AT1G31870.1 | Thale cress | nucleus | 73.79 | 78.79 |
| CDY69127 | Canola | cytosol | 7.51 | 72.58 |
| HORVU7Hr1G104590.1 | Barley | cytosol | 8.68 | 62.65 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 45.74 | 57.08 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 8.85 | 54.64 |
| PGSC0003DMT400058162 | Potato | nucleus | 48.58 | 50.96 |
| Solyc03g033950.2.1 | Tomato | nucleus | 41.24 | 50.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.58 | 50.46 |
| KRH48143 | Soybean | nucleus | 47.41 | 50.0 |
| Zm00001d048133_P001 | Maize | nucleus | 41.57 | 46.89 |
| Os08t0178300-01 | Rice | nucleus | 42.74 | 46.38 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 41.74 | 44.33 |
| KXG19224 | Sorghum | nucleus | 43.07 | 43.58 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 41.4 | 43.06 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 41.4 | 40.33 |
Protein Annotations
| EnsemblPlants:CDY29914 | EnsemblPlantsGene:GSBRNA2T00044384001 | InterPro:Bud13 | PFAM:PF09736 | ProteinID:CDY29914 | ProteinID:CDY29914.1 |
| SEG:seg | UniParc:UPI0004EE87BE | UniProt:A0A078GXR9 | MapMan:16.4.5.2.10 | : | : |
Description
BnaC05g29220DBnaC05g29220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXR9]
Coordinates
chrLK032246:+:32907..35849
Molecular Weight (calculated)
68457.4 Da
IEP (calculated)
10.188
GRAVY (calculated)
-1.293
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPSYLFLG FWNRFGFRLI AYGSSSGFSP CLLLEYVFEF WKMAAPRTGV KSMKDYLKKY ESSEVIEKKK KKKMKKPSKP EPTGVLVVDE DPVWQKQVDP
101: QEEEDNENDS AEERPVVDED IEVKRMRRLE EIKARRAQNA IAEDGSGWVS LSSDQGGCDD QRSDDISPPR RQRTRNDSPS PEPGPRGSLP ETDMSPPRRR
201: KRHYTPSPEP NRQHAKPVSL DSDLTPPRKR RARNDSPSPE PEDTAPKSLG EDLSPPPNRC VHPVSPERSG KRSDSLELDG DLSPPRRKKD SLASDVNKKS
301: NDLSPPRRRR YHSPSPEPGR KPSKSLGSNS DLSPPRRSVS VKGSRDSDLS PQRKTVSRSS NFGSSPPRRP RRESPPPQTS KEQRKTGLIS GKDIGSEYRK
401: KKEDEQLRFK NMDSELTGQN AEAVFRDKIT GKRITKEEYL QSKQKKVIEK PKEIKLEWGQ GLAQKRDAEA RLQELELEKD KPFARTRDDP ELDQMMKERV
501: RWGDPMAHLV KKKQYEAPLM DLGDNEEMKK SGFVIPQSIP KHSWITRGLE AAPNRYGIKP GRHWDGVDRS TGHEKDRFKK TSEKKATERE AYLWSVSDM
101: QEEEDNENDS AEERPVVDED IEVKRMRRLE EIKARRAQNA IAEDGSGWVS LSSDQGGCDD QRSDDISPPR RQRTRNDSPS PEPGPRGSLP ETDMSPPRRR
201: KRHYTPSPEP NRQHAKPVSL DSDLTPPRKR RARNDSPSPE PEDTAPKSLG EDLSPPPNRC VHPVSPERSG KRSDSLELDG DLSPPRRKKD SLASDVNKKS
301: NDLSPPRRRR YHSPSPEPGR KPSKSLGSNS DLSPPRRSVS VKGSRDSDLS PQRKTVSRSS NFGSSPPRRP RRESPPPQTS KEQRKTGLIS GKDIGSEYRK
401: KKEDEQLRFK NMDSELTGQN AEAVFRDKIT GKRITKEEYL QSKQKKVIEK PKEIKLEWGQ GLAQKRDAEA RLQELELEKD KPFARTRDDP ELDQMMKERV
501: RWGDPMAHLV KKKQYEAPLM DLGDNEEMKK SGFVIPQSIP KHSWITRGLE AAPNRYGIKP GRHWDGVDRS TGHEKDRFKK TSEKKATERE AYLWSVSDM
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.