Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104590.1 | Barley | cytosol | 11.25 | 65.06 |
| CDY69127 | Canola | cytosol | 7.92 | 61.29 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 11.46 | 56.7 |
| PGSC0003DMT400058162 | Potato | nucleus | 63.54 | 53.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.17 | 52.5 |
| KRH48143 | Soybean | nucleus | 61.88 | 52.29 |
| Solyc03g033950.2.1 | Tomato | nucleus | 52.71 | 51.95 |
| CDY35525 | Canola | nucleus | 57.08 | 49.64 |
| Bra033870.1-P | Field mustard | nucleus | 56.46 | 49.45 |
| AT1G31870.1 | Thale cress | nucleus | 57.08 | 48.84 |
| Zm00001d048133_P001 | Maize | nucleus | 51.46 | 46.52 |
| CDY29914 | Canola | nucleus, vacuole | 57.08 | 45.74 |
| Os08t0178300-01 | Rice | nucleus | 52.08 | 45.29 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 51.04 | 43.44 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 51.46 | 42.88 |
| KXG19224 | Sorghum | nucleus | 52.29 | 42.4 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 52.29 | 40.81 |
Protein Annotations
| ArrayExpress:VIT_02s0012g00850 | EMBL:FN596247 | EnsemblPlants:VIT_02s0012g00850.t01 | EnsemblPlantsGene:VIT_02s0012g00850 | EntrezGene:100245538 | EntrezGene:LOC100245538 |
| InterPro:Bud13 | ncoils:Coil | PANTHER:PTHR31809 | PFAM:PF09736 | ProteinID:CBI33922 | ProteinID:CBI33922.3 |
| RefSeq:XP_002278878 | RefSeq:XP_002278878.1 | RefSeq:XP_010663857.1 | RefSeq:XP_010663860.1 | SEG:seg | unigene:Vvi.17147 |
| UniParc:UPI00015C90E6 | UniProt:D7TU07 | wikigene:100245538 | wikigene:LOC100245538 | MapMan:16.4.5.2.10 | : |
Description
No Description!
Coordinates
chr2:-:6711972..6739055
Molecular Weight (calculated)
54897.1 Da
IEP (calculated)
10.249
GRAVY (calculated)
-1.431
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTSLKEY LKRYESNNEE ETKKKKKKKK KTKPDVSGVL VVDEDPTWQK PVKLEEEHDD SADEEKPQID EDIEVKRMKR LEQLRSKRPY HALSEDGSGW
101: VSISAAPTHS DSGDQNSDVS PPRRQRARYD TPSPEPEPRP SDSGREGSDL SPPRQRQRRY HTPSPEPGSK PSGSDFSPSR RPRRQTSADV ERKNSDSPHF
201: PHISSPRRVG RSSEHQDLSP PRKRRKGLGL SGSPDISPPR RSTQTDTPDL SPPRKSRKDV SSSKEPSKTG LISGKDIGEL NAKTKKNDWL RFKEMDPLIS
301: GRGAEPVYRD KRKGDRISKE EFLKSQKGEE KPKEKKLEWG KGLAQKREAE TKQQELELEK DKPFARTRDD PELDKILKDR VRWGDPMAHL VKRKNSELIL
401: PDLGDGEKMK ESGFIIPQEI PSHSWIKRGL DAAPNRYGIR PGRHWDGVDR STGFEKQMFK RTNEKQATER EAYLWSVADM
101: VSISAAPTHS DSGDQNSDVS PPRRQRARYD TPSPEPEPRP SDSGREGSDL SPPRQRQRRY HTPSPEPGSK PSGSDFSPSR RPRRQTSADV ERKNSDSPHF
201: PHISSPRRVG RSSEHQDLSP PRKRRKGLGL SGSPDISPPR RSTQTDTPDL SPPRKSRKDV SSSKEPSKTG LISGKDIGEL NAKTKKNDWL RFKEMDPLIS
301: GRGAEPVYRD KRKGDRISKE EFLKSQKGEE KPKEKKLEWG KGLAQKREAE TKQQELELEK DKPFARTRDD PELDKILKDR VRWGDPMAHL VKRKNSELIL
401: PDLGDGEKMK ESGFIIPQEI PSHSWIKRGL DAAPNRYGIR PGRHWDGVDR STGFEKQMFK RTNEKQATER EAYLWSVADM
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.