Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104590.1 | Barley | cytosol | 37.1 | 27.71 |
| HORVU7Hr1G017260.9 | Barley | cytosol | 32.26 | 20.62 |
| CDY35525 | Canola | nucleus | 72.58 | 8.15 |
| VIT_02s0012g00850.t01 | Wine grape | nucleus | 61.29 | 7.92 |
| Solyc03g033950.2.1 | Tomato | nucleus | 61.29 | 7.8 |
| Zm00001d048133_P001 | Maize | nucleus | 66.13 | 7.72 |
| CDY29914 | Canola | nucleus, vacuole | 72.58 | 7.51 |
| AT1G31870.1 | Thale cress | nucleus | 67.74 | 7.49 |
| Os08t0178300-01 | Rice | nucleus | 62.9 | 7.07 |
| KRH48143 | Soybean | nucleus | 61.29 | 6.69 |
| PGSC0003DMT400058162 | Potato | nucleus | 61.29 | 6.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.06 | 6.65 |
| KXG19224 | Sorghum | nucleus | 62.9 | 6.59 |
| TraesCS7D01G070100.1 | Wheat | nucleus | 58.06 | 6.38 |
| TraesCS4A01G372400.1 | Wheat | nucleus | 58.06 | 6.25 |
| HORVU7Hr1G073780.1 | Barley | mitochondrion | 58.06 | 5.85 |
Protein Annotations
| EnsemblPlants:CDY69127 | EnsemblPlantsGene:GSBRNA2T00083459001 | ProteinID:CDY69127 | ProteinID:CDY69127.1 | UniParc:UPI0004EEFC84 | UniProt:A0A078JUF2 |
| MapMan:16.4.5.2.10 | : | : | : | : | : |
Description
BnaCnng62000DBnaCnng62000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUF2]
Coordinates
chrLK038699:-:2598..2883
Molecular Weight (calculated)
7367.8 Da
IEP (calculated)
9.718
GRAVY (calculated)
-1.026
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MDLGADEKMK VWIFIPQSIP KHNWLTRGLE ATPSPYGIKP GRHYWDGVDC RHEKDRFKKT RE
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS
201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS
301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE
401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS
501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M
Arabidopsis Description
AT1G31870 protein [Source:UniProtKB/TrEMBL;Acc:Q9C6S8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.