Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52188 | Canola | nucleus | 81.4 | 76.64 |
| CDY02344 | Canola | cytosol | 45.58 | 42.73 |
| AT1G30860.1 | Thale cress | cytosol | 45.89 | 40.55 |
| CDY09519 | Canola | nucleus | 43.1 | 38.77 |
| CDY31650 | Canola | nucleus, plastid | 35.66 | 35.71 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 34.26 | 32.64 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 25.89 | 22.91 |
| KRH37161 | Soybean | nucleus | 30.39 | 21.26 |
| CDX96975 | Canola | cytosol | 22.02 | 20.67 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 17.36 | 20.63 |
| KRH12155 | Soybean | nucleus | 28.06 | 19.74 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 20.47 | 18.16 |
| CDY14941 | Canola | nucleus | 16.59 | 17.23 |
| CDY50063 | Canola | cytosol | 28.53 | 16.74 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 23.72 | 16.24 |
| CDX78978 | Canola | cytosol | 27.75 | 15.81 |
| PGSC0003DMT400035458 | Potato | nucleus | 24.96 | 15.56 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 23.57 | 15.42 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 17.05 | 14.88 |
| Solyc02g082100.2.1 | Tomato | vacuole | 24.81 | 14.84 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 16.74 | 14.71 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 16.9 | 14.4 |
| EER99396 | Sorghum | plastid | 17.05 | 14.25 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 16.59 | 13.84 |
| HORVU2Hr1G048520.1 | Barley | plastid | 13.8 | 13.84 |
| Zm00001d006417_P002 | Maize | plastid | 12.25 | 13.46 |
| Os07t0499800-01 | Rice | nucleus | 15.5 | 13.3 |
| CDY08599 | Canola | nucleus | 11.01 | 9.82 |
| CDY41355 | Canola | nucleus | 10.85 | 9.3 |
| CDX70223 | Canola | cytosol | 10.54 | 8.77 |
| CDY00948 | Canola | cytosol | 9.61 | 8.6 |
| CDY44857 | Canola | nucleus | 9.92 | 8.24 |
| CDY04520 | Canola | cytosol, plastid | 8.53 | 8.11 |
| CDX71406 | Canola | cytosol | 4.03 | 4.65 |
| Os03t0107500-00 | Rice | plasma membrane | 2.48 | 4.38 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078FHG8 | UniProt:A0A078FHG8 | EnsemblPlants:CDY12454 | ProteinID:CDY12454 |
| ProteinID:CDY12454.1 | ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00061735001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | SUPFAM:SSF57850 | UniParc:UPI0004EE5DFD | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC08g09430DBnaC08g09430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHG8]
Coordinates
chrLK032022:+:672019..674674
Molecular Weight (calculated)
73349.4 Da
IEP (calculated)
5.800
GRAVY (calculated)
-0.885
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSQVEIPS PSQRFGFILR DRNQTPIVYK KAPNHHHHQP VSDENSQNLV DSWIQTLTKK KDNNNETMKE KSDESNRNGA SSLVQIWEAR LNRSSGGNSP
101: SHNQSPVNSS RSDSGVNVQD SRFSESPSIE SEAEISDVEI ESRSHGGSVS DSCRVADLIR RLSNEAKVIS GGGLSTIRTP RPCVSSWSSS EKSSFPMVTP
201: RIRGRQAFTD LLMQMERDRH RELDSLLERN AVSRFTQRGR LQSMLRLRNL KRCQAVQEQN RSNSKSTGLN RIGSGGGSSV LNLRERFRAD ADKRKDHHFM
301: NKKAVEETEV TSDNKTMKNR GITLEAFFKE RLSLPNPNLE KATLRKGEGT VDGTVGSKNN CLQLQETIEV EEVCCNDDDS DKNEEEKTSP SACLEQETQP
401: QSVVHESIEI DQCLEQQETS YLNGWEDEEE YEEDEQSYYY GETNNDWLHE ISRPRSYWEE LRKKRYLEVM NTRSEKEDIR RLLERGPVTD FLQSGLRDQI
501: DRLMMSHDSS SSPIFASSPA GSWSCQDTEV TSTPVLSVHN PPSPEMELIS EMKTQIQQLQ QEMSLLRDSV KTCLDTNASL VHRENPMKRK CCVCDETQVE
601: AVLYRCGHMC TCLKCANELH WSGGKCPICR AQIMDVVRVF FDTRN
101: SHNQSPVNSS RSDSGVNVQD SRFSESPSIE SEAEISDVEI ESRSHGGSVS DSCRVADLIR RLSNEAKVIS GGGLSTIRTP RPCVSSWSSS EKSSFPMVTP
201: RIRGRQAFTD LLMQMERDRH RELDSLLERN AVSRFTQRGR LQSMLRLRNL KRCQAVQEQN RSNSKSTGLN RIGSGGGSSV LNLRERFRAD ADKRKDHHFM
301: NKKAVEETEV TSDNKTMKNR GITLEAFFKE RLSLPNPNLE KATLRKGEGT VDGTVGSKNN CLQLQETIEV EEVCCNDDDS DKNEEEKTSP SACLEQETQP
401: QSVVHESIEI DQCLEQQETS YLNGWEDEEE YEEDEQSYYY GETNNDWLHE ISRPRSYWEE LRKKRYLEVM NTRSEKEDIR RLLERGPVTD FLQSGLRDQI
501: DRLMMSHDSS SSPIFASSPA GSWSCQDTEV TSTPVLSVHN PPSPEMELIS EMKTQIQQLQ QEMSLLRDSV KTCLDTNASL VHRENPMKRK CCVCDETQVE
601: AVLYRCGHMC TCLKCANELH WSGGKCPICR AQIMDVVRVF FDTRN
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.