Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41170 | Canola | nucleus | 98.25 | 98.25 |
| CDY58906 | Canola | nucleus | 95.61 | 95.61 |
| CDY56997 | Canola | nucleus | 94.3 | 94.3 |
| AT3G60360.1 | Thale cress | nucleus | 85.53 | 85.53 |
| KRH42233 | Soybean | nucleus | 66.23 | 65.94 |
| VIT_08s0056g00160.t01 | Wine grape | nucleus | 65.35 | 65.07 |
| PGSC0003DMT400021078 | Potato | nucleus | 64.91 | 64.63 |
| GSMUA_Achr6P32500_001 | Banana | nucleus | 64.47 | 64.19 |
| Solyc10g079430.1.1 | Tomato | nucleus | 63.6 | 63.32 |
| GSMUA_Achr4P04810_001 | Banana | nucleus | 63.16 | 62.88 |
| EES03779 | Sorghum | nucleus | 60.53 | 59.48 |
| KRH58350 | Soybean | nucleus | 64.91 | 58.96 |
| TraesCS3A01G334700.1 | Wheat | nucleus | 58.77 | 58.26 |
| HORVU3Hr1G079290.1 | Barley | nucleus | 58.77 | 58.26 |
| Zm00001d012549_P001 | Maize | nucleus | 60.53 | 57.98 |
| TraesCS3B01G365600.1 | Wheat | nucleus | 57.89 | 57.39 |
| TraesCS3D01G328000.1 | Wheat | nucleus | 57.89 | 57.39 |
| Zm00001d041650_P001 | Maize | cytosol | 10.96 | 48.08 |
| Zm00001d050595_P001 | Maize | nucleus | 28.95 | 38.15 |
Protein Annotations
| MapMan:17.1.3.2.1.13 | GO:A0A078C4P3 | EnsemblPlants:CDX71815 | ProteinID:CDX71815 | ProteinID:CDX71815.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0032040 | EnsemblPlantsGene:GSBRNA2T00155537001 |
| PFAM:PF03998 | PIRSF:PIRSF015952 | PANTHER:PTHR12838 | InterPro:SSU_processome_Utp11 | UniParc:UPI0004EEF335 | SEG:seg |
Description
BnaC08g30590D
Coordinates
chrLK031795:+:712686..714297
Molecular Weight (calculated)
27289.9 Da
IEP (calculated)
10.488
GRAVY (calculated)
-1.309
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLRNAVPR PAHKERSQPQ ARKRFGLLEK HKDYAIRAKA YHQKEDIKKK LEQKAAFKNP DEFYFKMINS KTVDGVHRPK EEINKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTEEQPSRR HVYFAEDREE ARELELQAKS KTDISAMHIP KDIKKKMDRS YRDLEARKSR AKDLEKLYMD MSMQKELQKK
201: GRKRKLREDE ILNPNGKPVY KWKADRKR
101: YVFQKWQSEK NKIDKLTASL QCTEEQPSRR HVYFAEDREE ARELELQAKS KTDISAMHIP KDIKKKMDRS YRDLEARKSR AKDLEKLYMD MSMQKELQKK
201: GRKRKLREDE ILNPNGKPVY KWKADRKR
001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
Arabidopsis Description
EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.