Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021078 | Potato | nucleus | 97.38 | 97.38 |
| VIT_08s0056g00160.t01 | Wine grape | nucleus | 77.29 | 77.29 |
| KRH42233 | Soybean | nucleus | 71.62 | 71.62 |
| GSMUA_Achr4P04810_001 | Banana | nucleus | 71.18 | 71.18 |
| GSMUA_Achr6P32500_001 | Banana | nucleus | 70.74 | 70.74 |
| KRH58350 | Soybean | nucleus | 71.62 | 65.34 |
| EES03779 | Sorghum | nucleus | 65.94 | 65.09 |
| Zm00001d012549_P001 | Maize | nucleus | 66.81 | 64.29 |
| Bra007528.1-P | Field mustard | nucleus | 63.76 | 64.04 |
| Bra014494.1-P | Field mustard | nucleus | 63.76 | 64.04 |
| CDY41170 | Canola | nucleus | 63.76 | 64.04 |
| CDY56997 | Canola | nucleus | 63.76 | 64.04 |
| CDY58906 | Canola | nucleus | 63.76 | 64.04 |
| CDX71815 | Canola | mitochondrion, nucleus | 63.32 | 63.6 |
| HORVU3Hr1G079290.1 | Barley | nucleus | 62.01 | 61.74 |
| AT3G60360.1 | Thale cress | nucleus | 60.7 | 60.96 |
| TraesCS3B01G365600.1 | Wheat | nucleus | 61.14 | 60.87 |
| TraesCS3A01G334700.1 | Wheat | nucleus | 61.14 | 60.87 |
| TraesCS3D01G328000.1 | Wheat | nucleus | 60.7 | 60.43 |
| Zm00001d041650_P001 | Maize | cytosol | 10.92 | 48.08 |
| Zm00001d050595_P001 | Maize | nucleus | 27.95 | 36.99 |
Protein Annotations
| EnsemblPlants:Solyc10g079430.1.1 | EnsemblPlantsGene:Solyc10g079430.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0032040 | GO:GO:0042274 | InterPro:SSU_processome_Utp11 | ncoils:Coil | PANTHER:PTHR12838 | PFAM:PF03998 |
| PIRSF:PIRSF015952 | SEG:seg | UniParc:UPI000276A894 | UniProt:K4D2I4 | MapMan:17.1.3.2.1.13 | : |
Description
U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:K4D2I4]
Coordinates
chr10:+:60961384..60965222
Molecular Weight (calculated)
27079.7 Da
IEP (calculated)
10.691
GRAVY (calculated)
-1.165
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFKNAIPR RAHKERAQPQ ARKKFGLLEK HKDYVVRATS FHKKEQTLQK LKEKAAFRNP DEFYFKMVKT KTVDGVHKLE SQANKYTPEE LMLMKTQDIG
101: YILQKVQSEK KKIEKLTAML HSLDNKPSNK RVYYAEDREE AEELASKASE RGNLAASENL PSSIRRKTAT SYRELEARKS RVRDLEKVYM DMAMQKELQK
201: SGRKRKLREE ELVNPTTKPV FKWRQERKR
101: YILQKVQSEK KKIEKLTAML HSLDNKPSNK RVYYAEDREE AEELASKASE RGNLAASENL PSSIRRKTAT SYRELEARKS RVRDLEKVYM DMAMQKELQK
201: SGRKRKLREE ELVNPTTKPV FKWRQERKR
001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
Arabidopsis Description
EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.