Factsheet for AT3G60360.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014494.1-P	Field mustard	nucleus	85.96	85.96
CDY56997	Canola	nucleus	85.96	85.96
CDX71815	Canola	mitochondrion, nucleus	85.53	85.53
CDY58906	Canola	nucleus	85.53	85.53
CDY41170	Canola	nucleus	84.65	84.65
Bra007528.1-P	Field mustard	nucleus	84.65	84.65
KRH42233	Soybean	nucleus	63.6	63.32
VIT_08s0056g00160.t01	Wine grape	nucleus	63.6	63.32
GSMUA_Achr6P32500_001	Banana	nucleus	62.72	62.45
PGSC0003DMT400021078	Potato	nucleus	62.28	62.01
GSMUA_Achr4P04810_001	Banana	nucleus	60.96	60.7
Solyc10g079430.1.1	Tomato	nucleus	60.96	60.7
EES03779	Sorghum	nucleus	59.65	58.62
Zm00001d012549_P001	Maize	nucleus	60.09	57.56
HORVU3Hr1G079290.1	Barley	nucleus	57.89	57.39
TraesCS3A01G334700.1	Wheat	nucleus	57.89	57.39
TraesCS3B01G365600.1	Wheat	nucleus	57.46	56.96
TraesCS3D01G328000.1	Wheat	nucleus	57.46	56.96
KRH58350	Soybean	nucleus	61.84	56.18
Zm00001d041650_P001	Maize	cytosol	10.09	44.23
Zm00001d050595_P001	Maize	nucleus	26.75	35.26

Protein Annotations

MapMan:17.1.3.2.1.13	EntrezGene:825207	UniProt:A0A178V8J4	ProteinID:AEE80051.1	ArrayExpress:AT3G60360	EnsemblPlantsGene:AT3G60360
RefSeq:AT3G60360	TAIR:AT3G60360	RefSeq:AT3G60360-TAIR-G	EnsemblPlants:AT3G60360.1	TAIR:AT3G60360.1	EMBL:AY039876
EMBL:AY085156	EMBL:AY101514	Unigene:At.1231	EMBL:BT000725	ProteinID:CAB81822.1	Symbol:EDA14
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009561	GO:GO:0009987	GO:GO:0032040	GO:GO:0042274	RefSeq:NP_191595.1
ProteinID:OAP02048.1	PFAM:PF03998	PIRSF:PIRSF015952	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR12838	UniProt:Q9M223	InterPro:SSU_processome_Utp11	UniParc:UPI00000AC652

Description

EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]

Coordinates

chr3:-:22312258..22314427

Molecular Weight (calculated)

27150.6 Da

IEP (calculated)

10.588

GRAVY (calculated)

-1.325

Length

228 amino acids

Sequence
(BLAST)

001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.