Factsheet for VIT_08s0056g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00260.t01
VIT_03s0017g00210.t01
VIT_04s0008g05610.t01
VIT_06s0004g06590.t01
VIT_06s0080g00930.t01
VIT_08s0007g02790.t01
VIT_11s0016g00400.t01
VIT_13s0019g00340.t01
VIT_16s0098g00600.t01
VIT_16s0115g00130.t01
VIT_17s0000g01560.t01
VIT_17s0000g07350.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60360.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT3G60360.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT3G60360.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT3G60360.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT3G60360.1	VIT_11s0016g00400.t01	AT3G43230.1	21798944
AT3G60360.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT3G60360.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT3G60360.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT3G60360.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944
AT3G60360.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT3G60360.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT3G60360.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944
AT3G60360.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021078	Potato	nucleus	78.6	78.6
Solyc10g079430.1.1	Tomato	nucleus	77.29	77.29
GSMUA_Achr4P04810_001	Banana	nucleus	72.49	72.49
GSMUA_Achr6P32500_001	Banana	nucleus	72.05	72.05
KRH42233	Soybean	nucleus	70.31	70.31
EES03779	Sorghum	nucleus	68.12	67.24
Zm00001d012549_P001	Maize	nucleus	69.0	66.39
CDY56997	Canola	nucleus	65.94	66.23
CDY41170	Canola	nucleus	65.94	66.23
Bra014494.1-P	Field mustard	nucleus	65.94	66.23
Bra007528.1-P	Field mustard	nucleus	65.94	66.23
CDY58906	Canola	nucleus	65.07	65.35
CDX71815	Canola	mitochondrion, nucleus	65.07	65.35
KRH58350	Soybean	nucleus	70.74	64.54
AT3G60360.1	Thale cress	nucleus	63.32	63.6
TraesCS3A01G334700.1	Wheat	nucleus	61.57	61.3
TraesCS3B01G365600.1	Wheat	nucleus	61.57	61.3
HORVU3Hr1G079290.1	Barley	nucleus	61.14	60.87
TraesCS3D01G328000.1	Wheat	nucleus	61.14	60.87
Zm00001d041650_P001	Maize	cytosol	12.66	55.77
Zm00001d050595_P001	Maize	nucleus	29.69	39.31

Protein Annotations

EntrezGene:100255309	wikigene:100255309	MapMan:17.1.3.2.1.13	EMBL:AM447597	UniProt:C5DB53	ProteinID:CAN82884
ProteinID:CAN82884.1	ProteinID:CAQ58608	ProteinID:CAQ58608.1	ProteinID:CAQ58632	ProteinID:CAQ58632.1	ProteinID:CBI31135
ProteinID:CBI31135.3	EMBL:CU914150	EMBL:CU914151	ncoils:Coil	EMBL:FN595995	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	GO:GO:0042274	EntrezGene:LOC100255309
wikigene:LOC100255309	PFAM:PF03998	PIRSF:PIRSF015952	PANTHER:PTHR12838	InterPro:SSU_processome_Utp11	TIGR:TC55208
UniParc:UPI00015CC422	ArrayExpress:VIT_08s0056g00160	EnsemblPlantsGene:VIT_08s0056g00160	EnsemblPlants:VIT_08s0056g00160.t01	RefSeq:XP_002265743	RefSeq:XP_002265743.1
RefSeq:XP_010653097.1	RefSeq:XP_019077120.1	SEG:seg	:	:	:

Description

U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:C5DB53]

Coordinates

chr8:-:300736..310662

Molecular Weight (calculated)

27283.8 Da

IEP (calculated)

10.577

GRAVY (calculated)

-1.209

Length

229 amino acids

Sequence
(BLAST)

001: MSSFRNAISR RAYKERAQPH LRKKFGLLEK HKDYVVRAQA FHKKEEALQK LKEKAAFRNP DEFYFKMIKT RTVDGVHRPE SQANKYSPEE LMLMKTQDMG
101: YVLQKVQSEK KKIEKLTAML HSLDNQPTNR HVYYAEDREE AREIQAQSSR GGNLPSLDDV PNHIKRKTSA SYRELETRKN RVNDLEKLYM DMALQKELQK
201: RGRKRKLRED EIACPTSKPV YKWRAERKR

Best Arabidopsis Sequence Match ( AT3G60360.1 )
(BLAST)

001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR

Arabidopsis Description

EDA14U3 small nucleolar RNA-associated protein 11 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.