Factsheet for VIT_17s0000g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02940.t01
VIT_02s0012g00920.t01
VIT_03s0017g00210.t01
VIT_05s0020g00780.t01
VIT_05s0029g01220.t01
VIT_05s0094g00440.t01
VIT_06s0004g07530.t01
VIT_07s0141g00220.t01
VIT_08s0007g07790.t01
VIT_12s0028g02240.t01
VIT_12s0142g00160.t01
VIT_15s0021g02140.t01
VIT_16s0115g00130.t01
VIT_17s0000g01560.t01
VIT_17s0000g07350.t01
VIT_18s0001g09830.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24840.1	VIT_02s0012g00920.t01	AT1G31780.1	21798944
AT4G24840.1	VIT_05s0020g00780.t01	AT1G54770.1	21798944
AT4G24840.1	VIT_06s0004g07530.t01	AT2G30260.1	21798944
AT4G24840.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT4G24840.1	VIT_12s0028g02240.t01	AT2G42580.1	21798944
AT4G24840.1	VIT_18s0001g09830.t01	AT2G42580.1	21798944
AT4G24840.1	VIT_12s0142g00160.t01	AT2G42870.1	21798944
AT4G24840.1	VIT_05s0094g00440.t01	AT2G43650.1	21798944
AT4G24840.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT4G24840.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT4G24840.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT4G24840.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT4G24840.1	VIT_01s0011g02940.t01	AT3G25710.1	21798944
AT4G24840.1	VIT_07s0141g00220.t01	AT4G02590.1	21798944
AT4G24840.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT4G24840.1	VIT_05s0029g01220.t01	AT5G49210.1	21798944
AT4G24840.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03947	Soybean	cytosol	75.5	75.1
KRH57220	Soybean	cytosol	74.03	73.64
AT4G24840.1	Thale cress	cytosol, plastid	70.04	69.58
PGSC0003DMT400067640	Potato	cytosol, plastid	68.31	69.14
Solyc08g006660.1.1	Tomato	plastid	68.18	69.0
CDX92658	Canola	plastid	67.78	67.24
CDY11039	Canola	cytosol	67.24	66.71
CDY03412	Canola	plastid	67.38	66.58
CDY34317	Canola	cytosol, plastid	66.58	65.96
Bra013840.1-P	Field mustard	mitochondrion	57.26	65.65
GSMUA_AchrUn_...	Banana	cytosol	65.38	65.47
CDX70811	Canola	plastid	61.52	63.72
CDY51233	Canola	cytosol, plastid	61.12	63.4
Bra006453.1-P	Field mustard	cytosol, plastid	60.99	63.26
Bra019205.1-P	Field mustard	cytosol	67.91	59.86
OQU90613	Sorghum	cytosol	59.25	59.49
Zm00001d012851_P001	Maize	cytosol	58.46	59.4
Os03t0849600-01	Rice	cytosol	59.25	59.02
HORVU5Hr1G121540.1	Barley	cytosol	57.39	58.32
TraesCS5B01G549700.1	Wheat	cytosol	57.79	56.81
TraesCS4A01G335400.1	Wheat	cytosol	57.92	56.71
TraesCS5D01G536700.1	Wheat	cytosol	57.52	56.54
Zm00001d034842_P001	Maize	cytosol	58.32	55.09

Protein Annotations

EntrezGene:100244076	wikigene:100244076	MapMan:22.6.2.2	ProteinID:CBI15649	ProteinID:CBI15649.3	InterPro:COG2
InterPro:COG_complex_COG2_C	InterPro:COG_su2_N	ncoils:Coil	UniProt:D7SGW9	EMBL:FN594950	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0007030	GO:GO:0008150	GO:GO:0008565
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0017119	EntrezGene:LOC100244076
wikigene:LOC100244076	PFAM:PF06148	PFAM:PF12022	PANTHER:PTHR12961	TIGR:TC68025	UniParc:UPI00015C9E2A
ArrayExpress:VIT_17s0000g01560	EnsemblPlantsGene:VIT_17s0000g01560	EnsemblPlants:VIT_17s0000g01560.t01	unigene:Vvi.17438	RefSeq:XP_002279916	RefSeq:XP_002279916.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:1116792..1128703

Molecular Weight (calculated)

83584.0 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.087

Length

751 amino acids

Sequence
(BLAST)

001: MADTLPTRSA TDLFSDPIDS QPLWFKKSSF LQPEFDSEAY ISDLRTLVSF DTLRSELQTH LASLKHELID LINRDYADFV NLSTKLVDVD GAIVRMRAPL
101: TELREKILGF RESVESTLVA VQNGLRQRSE ASAAREILEL LLDTFHVVSK VEKLIKELPS VPADWSNGDV NSMARSSLNN GISLQHAENE TNLRETQSML
201: LERIASEMNR LKFYMAHAQN LPFVENMEKR IQSASLLLDA SLGHCFVDAL EHRDATAIYN CLRAYAAVDN TRNAEDIFRM TVVLPLIQKV IPQSGVVSGA
301: SGDELADDYQ QIEQHIVKDC KFLLEIASAE NSGLHVFNFL ANSILKEVLT AIQKGKPGTF SPGRPTEFLK NYKSSLDFLA HLEGYCPSRS AVAKFRAESV
401: YIEFMKQWNI GVYFSLRFQE IAGSLDSALI AGSLVPVQKL PSGPGNSQDL ILKQSVTLLE SLRSCWREDV FILSCSERFL RLSLQLLSRY SNWLSSGLAA
501: LKTGNAGRNP GFEWATSAVP EDFVYVIHDI NCLVTEVCGD YLEGVLQRLS SCSTEVLDLV KQSIVQAGKS LSDLLPLVMN AVIEALTEKS VEDLRQLKGI
601: TATYRMTHKP LPVRHSPYVS GVLRPVQAFL YGERAATYLT GEIRNELLRG AAFAITGHYY ELAADLVNVA RKTESSLQRI RQGAQRRAGA SSDVMDNNVS
701: DTDKICMQLF LDIQEYGRNL SALGVKAVEI PAYCSLWRCV APPDQQNAIN V

Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)

001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.