Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G536700.1 | Wheat | cytosol | 97.91 | 98.3 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 97.39 | 97.77 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 94.0 | 97.56 |
| OQU90613 | Sorghum | cytosol | 83.96 | 86.1 |
| Os03t0849600-01 | Rice | cytosol | 84.48 | 85.94 |
| Zm00001d012851_P001 | Maize | cytosol | 82.01 | 85.11 |
| Zm00001d034842_P001 | Maize | cytosol | 81.75 | 78.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.02 | 65.47 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 58.28 | 60.24 |
| Solyc08g006660.1.1 | Tomato | plastid | 57.89 | 59.84 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 56.71 | 57.92 |
| KRH03947 | Soybean | cytosol | 56.32 | 57.22 |
| Bra013840.1-P | Field mustard | mitochondrion | 48.37 | 56.64 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 55.8 | 56.61 |
| KRH57220 | Soybean | cytosol | 55.41 | 56.29 |
| CDY34317 | Canola | cytosol, plastid | 55.02 | 55.67 |
| CDY03412 | Canola | plastid | 54.89 | 55.39 |
| CDY11039 | Canola | cytosol | 54.5 | 55.22 |
| CDX92658 | Canola | plastid | 54.5 | 55.22 |
| CDX70811 | Canola | plastid | 49.93 | 52.83 |
| CDY51233 | Canola | cytosol, plastid | 49.67 | 52.62 |
| Bra006453.1-P | Field mustard | cytosol, plastid | 49.54 | 52.49 |
| Bra019205.1-P | Field mustard | cytosol | 54.37 | 48.94 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G335400.1 | EnsemblPlantsGene:TraesCS4A01G335400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0006810 | GO:GO:0007030 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016043 | InterPro:COG2 | InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil |
| PANTHER:PTHR12961 | PFAM:PF06148 | PFAM:PF12022 | SEG:seg | MapMan:22.6.2.2 | : |
Description
No Description!
Coordinates
chr4A:-:617945575..617951208
Molecular Weight (calculated)
84781.6 Da
IEP (calculated)
6.302
GRAVY (calculated)
-0.152
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLAVAPPR APAPPQPPPA AXAAKDLFGE TIEAHPPWFR PEAFLRAGFD PDAYVAELRS YVPLESLAAE LRSHLAALRA ELVGLINRDY ADFVGLSARL
101: KGVDAAAARM RAPLADLRDK VAAFRAAASA ALAALRAGLE QRAAATQARE LLELLLDTSH VVSKVEKLIK ELPTAPSDSS DVEVRSVDKG YSGNDTTSPN
201: VEAGTDVRET QSILLERIAS EMNRLKFYIS HAQNLPFIEN MEKRVQGATK LLDGSLERCF VVGLEHRDAK VIYNCLRAYA AIDNTSSAEE LFRTTVVSPL
301: IQKIVPQNYA KAVSGVSSDD LEDDYEQIMQ CVEKDCKFIL EISSSANSVL HIFDFLANSI LKEVHSAIMK GKPGACSPGK PKEFLRNYKA SLKFLDFLEG
401: YCPSKSAVTK FRSEPAYTDF MRLWHVSVYF SLRFQEIAGG LDGALTATIS PVGVNENQMK QKPLLLKQSI KLLESLQSCW SDDVLVFSHS DKFLRLSLQL
501: ISRYTIWLSS GLAARNASDG SSSSPADPEW ALSVPVEDFI YVMHDVNAVI GELSESGDFV GRVNQLLASC PIELLTLVKQ SILQAVEPLK ELLPSIMDVM
601: IGVIVKRSNE DLKHLKGITA TYRMTNKLPV RHSPYVSGIL HPLKVFLEGD RVHYLTEDDK TKLRRGSTDK ITATYYDMVS EVVNVARKTE SSLQRLRQGQ
701: QKRIGGSTDA SDNIISDTDK ICMQLFLDIQ EYARNLRTLG IDAREIESYR SLWQCVAPKD KQDSIQF
101: KGVDAAAARM RAPLADLRDK VAAFRAAASA ALAALRAGLE QRAAATQARE LLELLLDTSH VVSKVEKLIK ELPTAPSDSS DVEVRSVDKG YSGNDTTSPN
201: VEAGTDVRET QSILLERIAS EMNRLKFYIS HAQNLPFIEN MEKRVQGATK LLDGSLERCF VVGLEHRDAK VIYNCLRAYA AIDNTSSAEE LFRTTVVSPL
301: IQKIVPQNYA KAVSGVSSDD LEDDYEQIMQ CVEKDCKFIL EISSSANSVL HIFDFLANSI LKEVHSAIMK GKPGACSPGK PKEFLRNYKA SLKFLDFLEG
401: YCPSKSAVTK FRSEPAYTDF MRLWHVSVYF SLRFQEIAGG LDGALTATIS PVGVNENQMK QKPLLLKQSI KLLESLQSCW SDDVLVFSHS DKFLRLSLQL
501: ISRYTIWLSS GLAARNASDG SSSSPADPEW ALSVPVEDFI YVMHDVNAVI GELSESGDFV GRVNQLLASC PIELLTLVKQ SILQAVEPLK ELLPSIMDVM
601: IGVIVKRSNE DLKHLKGITA TYRMTNKLPV RHSPYVSGIL HPLKVFLEGD RVHYLTEDDK TKLRRGSTDK ITATYYDMVS EVVNVARKTE SSLQRLRQGQ
701: QKRIGGSTDA SDNIISDTDK ICMQLFLDIQ EYARNLRTLG IDAREIESYR SLWQCVAPKD KQDSIQF
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.