Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G322000.1 | Wheat | plastid | 97.99 | 98.48 |
| TraesCS6A01G291500.1 | Wheat | plastid | 97.99 | 97.99 |
| EES05586 | Sorghum | plastid | 81.91 | 82.74 |
| Os02t0730500-01 | Rice | nucleus, plastid | 80.4 | 82.05 |
| Zm00001d017927_P001 | Maize | nucleus | 79.9 | 80.71 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 95.48 | 71.97 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 61.31 | 63.21 |
| Solyc05g053220.2.1 | Tomato | nucleus | 61.31 | 63.21 |
| PGSC0003DMT400069825 | Potato | nucleus | 60.8 | 62.69 |
| KRH16007 | Soybean | nucleus | 32.16 | 56.14 |
| AT1G54770.1 | Thale cress | nucleus | 52.26 | 55.03 |
| KRH77516 | Soybean | endoplasmic reticulum | 54.77 | 54.77 |
| KRH27951 | Soybean | nucleus | 54.27 | 54.55 |
| AT5G30495.2 | Thale cress | nucleus | 53.27 | 54.08 |
| Zm00001d051760_P001 | Maize | plastid | 77.89 | 54.01 |
| CDY59823 | Canola | nucleus | 51.26 | 53.12 |
| Bra036122.1-P | Field mustard | nucleus | 51.26 | 53.12 |
| CDY00016 | Canola | nucleus | 50.75 | 52.6 |
| KRH16004 | Soybean | nucleus | 50.25 | 51.55 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 59.3 | 39.33 |
| Zm00001d030306_P009 | Maize | cytosol | 27.64 | 36.67 |
| Zm00001d013738_P005 | Maize | mitochondrion | 29.15 | 34.32 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 30.65 | 22.18 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G272800.1 | EnsemblPlantsGene:TraesCS6D01G272800 | InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:381546587..381548810
Molecular Weight (calculated)
22421.1 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.896
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAAAAPIG LSWAPQLPSL AAAGGSSKKG SAPTPSIDAQ ESLWKPSNEL VDGLYVPPRD PRKVNKMARK NVKDTTGKGW FDMPAPSITP ELKKDLEILQ
101: LRHVMDPKRH FKRSGKSKAL PKYFQVGTVI EPASEFYSSR LTKHERKQTL VDELLSDQKL KNYRMRKVRE IQVARTPGGN QKWKNKGKQT FKRAKDRRK
101: LRHVMDPKRH FKRSGKSKAL PKYFQVGTVI EPASEFYSSR LTKHERKQTL VDELLSDQKL KNYRMRKVRE IQVARTPGGN QKWKNKGKQT FKRAKDRRK
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.