Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G157300.1 | Wheat | nucleus | 94.46 | 96.72 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 93.88 | 95.83 |
| Os09t0106700-01 | Rice | nucleus | 70.26 | 75.55 |
| Zm00001d005300_P001 | Maize | nucleus | 60.35 | 72.63 |
| HORVU5Hr1G049880.1 | Barley | plastid | 87.76 | 70.99 |
| Zm00001d019712_P001 | Maize | nucleus | 71.14 | 70.72 |
| EER98550 | Sorghum | nucleus | 74.93 | 70.22 |
| KRH05621 | Soybean | nucleus | 46.94 | 60.07 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 46.36 | 59.11 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 51.31 | 56.41 |
| KRH61351 | Soybean | nucleus | 42.27 | 55.98 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 46.65 | 55.17 |
| KRH15420 | Soybean | nucleus | 43.73 | 54.95 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 44.61 | 54.26 |
| KRH57983 | Soybean | nucleus | 46.65 | 54.24 |
| KRH28419 | Soybean | nucleus | 46.65 | 53.87 |
| CDY22442 | Canola | nucleus | 42.86 | 53.45 |
| KRH77058 | Soybean | nucleus | 47.23 | 53.11 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 47.81 | 52.4 |
| PGSC0003DMT400008569 | Potato | nucleus | 48.4 | 51.88 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 44.9 | 51.85 |
| Bra032176.1-P | Field mustard | nucleus | 44.02 | 51.71 |
| CDY38933 | Canola | nucleus | 44.02 | 51.71 |
| CDY44045 | Canola | nucleus | 42.86 | 51.58 |
| Solyc04g078420.1.1 | Tomato | nucleus | 48.98 | 51.22 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 42.86 | 51.04 |
| CDX89554 | Canola | nucleus | 43.44 | 50.85 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 44.9 | 50.83 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.07 | 50.38 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 43.44 | 50.34 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 44.31 | 50.33 |
| CDY12830 | Canola | nucleus | 37.03 | 50.2 |
| CDX75635 | Canola | nucleus | 43.73 | 50.17 |
| Bra012149.1-P | Field mustard | nucleus | 43.15 | 50.0 |
| Bra017813.1-P | Field mustard | nucleus | 38.19 | 49.43 |
| CDY29542 | Canola | nucleus | 38.19 | 49.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.52 | 49.12 |
| CDX72621 | Canola | nucleus | 37.9 | 49.06 |
| CDX69287 | Canola | nucleus | 43.73 | 49.02 |
| CDY01420 | Canola | nucleus | 37.32 | 48.67 |
| CDY23023 | Canola | nucleus | 41.11 | 48.62 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 40.82 | 48.61 |
| Bra010593.1-P | Field mustard | nucleus | 42.86 | 48.2 |
| AT5G67300.1 | Thale cress | nucleus | 42.57 | 47.87 |
| TraesCS6D01G162900.1 | Wheat | nucleus | 41.4 | 47.81 |
| Bra012910.1-P | Field mustard | nucleus | 40.52 | 47.44 |
| CDY02098 | Canola | nucleus | 40.52 | 47.44 |
| TraesCS7D01G515100.1 | Wheat | nucleus | 40.52 | 47.28 |
| AT2G23290.1 | Thale cress | nucleus | 41.98 | 46.6 |
| CDY57355 | Canola | nucleus | 37.61 | 46.4 |
| Solyc02g092930.1.1 | Tomato | nucleus | 48.69 | 46.26 |
| Bra036048.1-P | Field mustard | nucleus | 35.86 | 46.24 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 49.85 | 46.09 |
| CDY30608 | Canola | nucleus | 35.57 | 46.04 |
| Bra011749.1-P | Field mustard | nucleus | 44.02 | 46.04 |
| AT4G37260.1 | Thale cress | nucleus | 42.57 | 45.62 |
| AT3G50060.1 | Thale cress | nucleus | 39.65 | 45.18 |
| TraesCS7D01G515000.1 | Wheat | nucleus | 38.48 | 44.3 |
| Bra029990.1-P | Field mustard | nucleus | 37.9 | 44.22 |
| TraesCS7D01G514800.1 | Wheat | nucleus | 38.78 | 37.15 |
| CDX68566 | Canola | nucleus | 33.24 | 36.31 |
| TraesCS4D01G297900.1 | Wheat | nucleus | 26.82 | 35.52 |
| TraesCS1D01G225200.1 | Wheat | nucleus | 30.03 | 33.88 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 17.78 | 24.4 |
| TraesCS3D01G191400.1 | Wheat | nucleus | 22.74 | 24.3 |
| TraesCS4D01G102100.1 | Wheat | nucleus | 18.95 | 23.47 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 28.57 | 20.9 |
| TraesCS3D01G432300.2 | Wheat | nucleus | 19.24 | 18.64 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G164600.1 | EnsemblPlantsGene:TraesCS5D01G164600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:255988297..255989636
Molecular Weight (calculated)
36521.2 Da
IEP (calculated)
9.549
GRAVY (calculated)
-0.577
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACRAGGGG GGRDVDRIKG PWSPEEDDAL QRLVGRHGAR NWSLISKSIP GRSGKSCRLR WCNQLSPQVE HRPFTPDEDD TILRAHARFG NKWATIARLL
101: SGRTDNAIKN HWNSTLKRKY SSSSSTSASA SASPADDAMA NDDDDRRPLK RTSSDGYPGL CFSPGSPSGS DLSDSSHQSL PSVMPSAASQ QPHVYRPVAR
201: AGGVVVLPTA TPQLPQPSPP SPPPPPPPPA TSLSLSLSLP GLDAPEPAPV AQAQPMSMPP PPAHVPVQPA AAPQMPPPMP FQLQPPPVPQ ARAAAPFNGE
301: FLSMMQEMIR IEVRNYMSGF DPRSSPADGV HAAKRMMSMA KIE
101: SGRTDNAIKN HWNSTLKRKY SSSSSTSASA SASPADDAMA NDDDDRRPLK RTSSDGYPGL CFSPGSPSGS DLSDSSHQSL PSVMPSAASQ QPHVYRPVAR
201: AGGVVVLPTA TPQLPQPSPP SPPPPPPPPA TSLSLSLSLP GLDAPEPAPV AQAQPMSMPP PPAHVPVQPA AAPQMPPPMP FQLQPPPVPQ ARAAAPFNGE
301: FLSMMQEMIR IEVRNYMSGF DPRSSPADGV HAAKRMMSMA KIE
001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
Arabidopsis Description
MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.