Factsheet for Solyc04g078420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008569	Potato	nucleus	93.29	95.62
VIT_18s0001g09850.t01	Wine grape	nucleus	60.06	62.94
VIT_07s0129g01050.t01	Wine grape	nucleus	56.4	59.29
KRH28419	Soybean	nucleus	53.66	59.26
KRH77058	Soybean	nucleus	54.88	59.02
KRH57983	Soybean	nucleus	50.91	56.61
Zm00001d005300_P001	Maize	nucleus	48.78	56.14
Os09t0106700-01	Rice	nucleus	52.74	54.23
TraesCS5B01G157300.1	Wheat	nucleus	52.13	51.04
TraesCS5A01G159600.1	Wheat	nucleus	51.83	50.6
Bra017813.1-P	Field mustard	nucleus	40.55	50.19
CDY29542	Canola	nucleus	40.55	50.19
Zm00001d019712_P001	Maize	nucleus	52.44	49.86
CDX72621	Canola	nucleus	40.24	49.81
TraesCS5D01G164600.1	Wheat	nucleus	51.22	48.98
Solyc02g092930.1.1	Tomato	nucleus	53.66	48.75
EER98550	Sorghum	nucleus	52.74	47.27
Solyc04g079360.1.1	Tomato	nucleus	31.4	40.87
HORVU5Hr1G049880.1	Barley	plastid	50.61	39.15
Solyc09g011780.2.1	Tomato	nucleus	30.79	26.58
Solyc05g052850.2.1	Tomato	nucleus	27.13	23.8
Solyc04g064540.2.1	Tomato	nucleus	20.73	22.01
Solyc10g081320.1.1	Tomato	nucleus	20.12	20.69
Solyc05g007870.1.1	Tomato	nucleus	21.04	16.55

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BUS7	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g078420.1	EnsemblPlants:Solyc04g078420.1.1	UniParc:UPI0002766A37
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:63161896..63162882

Molecular Weight (calculated)

35808.7 Da

IEP (calculated)

9.315

GRAVY (calculated)

-0.553

Length

328 amino acids

Sequence
(BLAST)

001: MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWTLI SKSVPGRSGK SCRLRWCNQL SPQVEHRAFT PEEDDTIIRA HAKFGNKWAT IARLLSGRTD
101: NAIKNHWNST LKRKCPSMSE DLSFETPQPP LKRSSSVGPC TNFSSVMNPG SPSGSDLSDS SLSGFPQSHV YRPVPRTGGI FPLPPPPPVK QIEIPPSVPD
201: PPTSLCLSLP GSGSGSIEKP TQSPKSPPLP PPPLPAVDKP IPPSVPVTCP PSAFMGHLAQ SNQSYDFSAA PKSGEKQFFT PEFLSVLQDM IRKEVKSYMS
301: GFEQNGLCMQ TDAIRNAVIK RIGISKIE

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.