Factsheet for Solyc09g011780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052395	Potato	nucleus	95.0	95.25
KRH75766	Soybean	nucleus	54.21	58.86
KRG88785	Soybean	nucleus	54.47	58.81
VIT_08s0007g01540.t01	Wine grape	nucleus	57.37	53.17
GSMUA_Achr9P03720_001	Banana	nucleus	43.68	51.55
GSMUA_Achr6P33470_001	Banana	nucleus	29.47	49.78
Solyc05g052850.2.1	Tomato	nucleus	44.74	45.45
Zm00001d012379_P001	Maize	nucleus	39.74	37.66
OQU87862	Sorghum	nucleus	39.47	37.59
Os01t0850400-01	Rice	nucleus	40.79	37.53
Solyc04g079360.1.1	Tomato	nucleus	24.47	36.9
GSMUA_Achr5P28780_001	Banana	nucleus	34.47	33.0
TraesCS3A01G365200.1	Wheat	nucleus	39.21	32.25
TraesCS3B01G397100.1	Wheat	nucleus	39.47	32.05
TraesCS3D01G358400.1	Wheat	nucleus	39.47	31.98
HORVU3Hr1G085570.1	Barley	plastid	37.89	31.24
Solyc04g078420.1.1	Tomato	nucleus	26.58	30.79
Solyc02g092930.1.1	Tomato	nucleus	27.11	28.53
Solyc04g064540.2.1	Tomato	nucleus	18.95	23.3
Solyc10g081320.1.1	Tomato	nucleus	18.68	22.26
Solyc05g007870.1.1	Tomato	nucleus	18.95	17.27

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CRK4	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc09g011780.2	EnsemblPlants:Solyc09g011780.2.1	UniParc:UPI000276B52F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:5070696..5075388

Molecular Weight (calculated)

40847.3 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.588

Length

380 amino acids

Sequence
(BLAST)

001: MENDTPEVQE VTVAVDGSHG GGIGDASMGG GGGGGGVDGG DEEEVLMLED GSGSSDQVRK KTADRVKGPW SPEEDAILSR LVSNFGARNW SLIARGIPGR
101: SGKSCRLRWC NQLDPAVKRK PFTDEEDRII LQAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCAE HGKLRSDSSN ILEDASAGKS KASSEETQSC
201: GDVNSLKAIE AKDVSSQENQ EGNHYEDRSQ EVVQQSDVAN DPRTLFRPVA RISAFSVYGS LNVPESQLQT PRLIPTQAPD LGITKLLEGA FTDRLVPHQC
301: GHGCCGNVNQ EINGSSLLGP EFVDYAEPPS FSSHELAALA TEISNVAWYK SGLENSSIEA TFNPTTRAAC GTSHLPSRPF

Best Arabidopsis Sequence Match ( AT3G09230.1 )
(BLAST)

001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST

Arabidopsis Description

MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.