Factsheet for Solyc04g064540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063862	Potato	nucleus	91.26	93.38
GSMUA_Achr3P16490_001	Banana	nucleus	31.72	58.33
Zm00001d004681_P001	Maize	nucleus	33.33	53.93
VIT_18s0001g15260.t01	Wine grape	nucleus	51.13	49.22
GSMUA_Achr9P08480_001	Banana	nucleus	39.81	48.05
Zm00001d041818_P001	Maize	nucleus	33.66	46.22
KRH64569	Soybean	nucleus	49.51	45.27
KRH53362	Soybean	nucleus	47.9	44.71
EES09660	Sorghum	nucleus	39.16	43.84
Os11t0207600-00	Rice	nucleus, plastid	37.22	43.07
GSMUA_Achr6P17630_001	Banana	nucleus	36.57	42.97
Zm00001d049079_P001	Maize	nucleus	38.19	42.6
CDY71713	Canola	nucleus	31.39	42.17
EES15780	Sorghum	nucleus	34.3	42.06
GSMUA_Achr3P18970_001	Banana	nucleus	35.6	41.98
TraesCS4B01G105200.1	Wheat	nucleus	37.22	41.82
HORVU4Hr1G017040.2	Barley	nucleus	37.54	41.73
TraesCS4D01G102100.1	Wheat	nucleus	37.22	41.52
GSMUA_Achr10P...	Banana	nucleus	34.63	41.15
TraesCS4A01G211100.1	Wheat	nucleus	36.57	40.94
AT4G33450.1	Thale cress	nucleus	33.01	40.8
CDX68977	Canola	nucleus	32.36	40.0
CDX75353	Canola	nucleus	32.36	39.84
CDY28302	Canola	nucleus	32.36	39.84
Bra011441.1-P	Field mustard	nucleus	32.04	39.76
Bra034565.1-P	Field mustard	nucleus	32.04	39.44
Solyc10g081320.1.1	Tomato	nucleus	34.63	33.54
Solyc05g007870.1.1	Tomato	nucleus	36.57	27.1
Solyc04g079360.1.1	Tomato	nucleus	20.71	25.4
Solyc04g078420.1.1	Tomato	nucleus	22.01	20.73
Solyc09g011780.2.1	Tomato	nucleus	23.3	18.95
Solyc02g092930.1.1	Tomato	nucleus	22.01	18.84
Solyc05g052850.2.1	Tomato	nucleus	22.65	18.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BT45	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF496
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g064540.2	EnsemblPlants:Solyc04g064540.2.1	UniParc:UPI000276644E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:55694419..55696644

Molecular Weight (calculated)

35718.4 Da

IEP (calculated)

9.899

GRAVY (calculated)

-1.097

Length

309 amino acids

Sequence
(BLAST)

001: MAEGGGSGDD TTRSSCPRGH WRPAEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW FNQLDPRINR RPFSEDEEEK LIGAHRIHGN KWALISRLFP
101: GRTDNAVKNH WHVLMARKQR EQSKICGKRS LYQQQQHDSF LSDSKSSCYG FRRRNNNNNN NNMRIQEGNY GSKINFFEFQ NPNKDRVFSM STTYSSSSPE
201: FCGRIGSHLF RESSIDQKSL RQNNLSFSSH GRGGDNNNCK RSTTFQNPFS YVDRNEYDSI TERVVNVSNS TFSFGKILKE NIEQQKYGEE AREKKDIPFI
301: DFLGVGISS

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.