Factsheet for PGSC0003DMT400063862

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g064540.2.1	Tomato	nucleus	93.38	91.26
GSMUA_Achr3P16490_001	Banana	nucleus	32.45	58.33
Zm00001d004681_P001	Maize	nucleus	34.11	53.93
VIT_18s0001g15260.t01	Wine grape	nucleus	51.66	48.6
GSMUA_Achr9P08480_001	Banana	nucleus	40.4	47.66
Zm00001d041818_P001	Maize	nucleus	34.11	45.78
KRH64569	Soybean	nucleus	50.0	44.67
KRH53362	Soybean	nucleus	48.34	44.11
GSMUA_Achr6P17630_001	Banana	nucleus	38.08	43.73
PGSC0003DMT400079714	Potato	nucleus	35.1	43.44
EES09660	Sorghum	nucleus	39.4	43.12
CDY71713	Canola	nucleus	32.78	43.04
Zm00001d049079_P001	Maize	nucleus	38.74	42.24
Os11t0207600-00	Rice	nucleus, plastid	37.09	41.95
EES15780	Sorghum	nucleus	34.77	41.67
AT4G33450.1	Thale cress	nucleus	34.44	41.6
TraesCS4B01G105200.1	Wheat	nucleus	37.75	41.45
HORVU4Hr1G017040.2	Barley	nucleus	38.08	41.37
GSMUA_Achr3P18970_001	Banana	nucleus	35.76	41.22
TraesCS4D01G102100.1	Wheat	nucleus	37.75	41.16
GSMUA_Achr10P...	Banana	nucleus	35.43	41.15
CDX68977	Canola	nucleus	33.77	40.8
CDX75353	Canola	nucleus	33.77	40.64
CDY28302	Canola	nucleus	33.77	40.64
TraesCS4A01G211100.1	Wheat	nucleus	37.09	40.58
Bra011441.1-P	Field mustard	nucleus	33.44	40.56
Bra034565.1-P	Field mustard	nucleus	33.44	40.24
PGSC0003DMT400072258	Potato	nucleus	35.1	33.02
PGSC0003DMT400047415	Potato	nucleus	37.75	26.57
PGSC0003DMT400020635	Potato	nucleus	21.19	25.5
PGSC0003DMT400008569	Potato	nucleus	22.19	20.94
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	23.51	19.14
PGSC0003DMT400052395	Potato	nucleus	22.85	18.21
PGSC0003DMT400069921	Potato	nucleus	22.19	17.91

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102602867	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CBE0	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400024822	PGSC:PGSC0003DMG400024822	EnsemblPlants:PGSC0003DMT400063862	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF496
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002957A88	RefSeq:XP_006356314.1	SEG:seg

Description

R2r3-myb transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024822]

Coordinates

chr4:-:57965342..57966851

Molecular Weight (calculated)

34961.4 Da

IEP (calculated)

9.869

GRAVY (calculated)

-1.149

Length

302 amino acids

Sequence
(BLAST)

001: MAEGGGSGDD TIRSSCQRGH WRPAEDERLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW FNQLDPRINR RPFSEDEEER LIGAHRIHGN KWALISRLFP
101: GRTDNAVKNH WHVLMARKQR EQSKICGKRS LYQQQQQQHD NFDSKSSCYG FRRRNNNNNN NNNNTRIQEG NYGSKINFFE FQNPNKDRVF SMSTTYSSEF
201: CGSHLFRESS IDQKSLCQNN LSFSSHGRGG GGGDNNCKRS TTFQNPFSYA DRNERVVNIS HSTFSFGKIL RENIEQQQKY GEEAREKKDI PFIDFLGVGI
301: SS

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.