Factsheet for VIT_18s0001g15260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53362	Soybean	nucleus	57.63	55.89
KRH64569	Soybean	nucleus	57.32	54.44
PGSC0003DMT400063862	Potato	nucleus	48.6	51.66
Solyc04g064540.2.1	Tomato	nucleus	49.22	51.13
VIT_17s0000g01890.t01	Wine grape	nucleus	33.96	49.32
VIT_04s0044g01380.t01	Wine grape	nucleus	41.74	44.37
VIT_18s0001g11170.t01	Wine grape	nucleus	20.25	28.38
VIT_01s0026g02600.t01	Wine grape	nucleus	36.76	25.82
VIT_08s0056g01190.t01	Wine grape	golgi	34.89	25.11
VIT_07s0129g01050.t01	Wine grape	nucleus	23.68	24.36
VIT_13s0067g01360.t01	Wine grape	nucleus	19.0	24.11
VIT_03s0180g00210.t01	Wine grape	nucleus	22.43	23.76
VIT_18s0001g09850.t01	Wine grape	nucleus	23.05	23.64
VIT_14s0108g01010.t01	Wine grape	nucleus	33.96	22.9
VIT_08s0007g01540.t01	Wine grape	nucleus	26.48	20.73
VIT_13s0019g03200.t01	Wine grape	nucleus	23.68	20.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253993	wikigene:100253993	MapMan:15.5.2.1	ProteinID:CBI19947	ProteinID:CBI19947.3
UniProt:E0CQL8	EMBL:FN595227	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100253993	wikigene:LOC100253993	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF496	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C8042	ArrayExpress:VIT_18s0001g15260
EnsemblPlantsGene:VIT_18s0001g15260	EnsemblPlants:VIT_18s0001g15260.t01	RefSeq:XP_002278632	RefSeq:XP_002278632.2	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:13397962..13399162

Molecular Weight (calculated)

36515.4 Da

IEP (calculated)

9.952

GRAVY (calculated)

-0.913

Length

321 amino acids

Sequence
(BLAST)

001: MEESSDDAKT CPRGHWRPAE DEKLRQLVEE YGAQNWNSIA EKLQGRSGKS CRLRWFNQLD PRINRKPFTE EEEERLLAAH RIHGNKWALI SRLFPGRTDN
101: AVKNHWHVIM ARKQREQSKL CGKRSYKDVL SDSNTSSNGF RGSNSRSQQY SSANRLENSR LFEFLNPNKE GIFSISPSSS SPSWTFARSI SKATNNSSST
201: DLLRRGGRDH FNSCSSDGIM DSQNSLDRSL YRYFSNSSAY GGYRTSTAFG FPNYKRVVSG PVGYSKLGDP HGMLKREFVN FGDNSPTFAK MIMTNQQEQE
301: DESIKQKNIP FIDFLGVGIS S

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.