Factsheet for VIT_14s0108g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0435700-00	Rice	nucleus	29.2	53.88
VIT_17s0000g01890.t01	Wine grape	nucleus	21.85	47.06
TraesCS3D01G432300.2	Wheat	nucleus	34.24	46.05
TraesCS3A01G439500.1	Wheat	nucleus	34.24	46.05
TraesCS3B01G473600.1	Wheat	nucleus	34.03	45.76
Zm00001d032194_P002	Maize	nucleus, plastid	32.98	41.1
GSMUA_Achr5P23290_001	Banana	nucleus	25.21	39.74
GSMUA_Achr6P02580_001	Banana	nucleus	28.57	38.42
HORVU3Hr1G096010.6	Barley	nucleus	28.99	36.13
VIT_04s0044g01380.t01	Wine grape	nucleus	21.64	34.11
VIT_18s0001g15260.t01	Wine grape	nucleus	22.9	33.96
Solyc05g007870.1.1	Tomato	nucleus	29.62	33.81
PGSC0003DMT400047415	Potato	nucleus	30.25	33.57
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	32.98	33.4
VIT_01s0026g02600.t01	Wine grape	nucleus	31.51	32.82
VIT_08s0056g01190.t01	Wine grape	golgi	28.57	30.49
VIT_18s0001g11170.t01	Wine grape	nucleus	13.45	27.95
OQU80507	Sorghum	nucleus	35.29	24.6
VIT_13s0067g01360.t01	Wine grape	nucleus	12.82	24.11
Os08t0435725-00	Rice	cytosol	4.83	23.0
VIT_07s0129g01050.t01	Wine grape	nucleus	14.29	21.79
VIT_03s0180g00210.t01	Wine grape	nucleus	13.87	21.78
VIT_18s0001g09850.t01	Wine grape	nucleus	14.29	21.73
VIT_13s0019g03200.t01	Wine grape	nucleus	15.76	19.84
VIT_08s0007g01540.t01	Wine grape	nucleus	14.29	16.59

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245627	wikigene:100245627	MapMan:15.5.2.1	ProteinID:CCB47568	ProteinID:CCB47568.1
UniProt:F6H5U7	EMBL:FN595239	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100245627	wikigene:LOC100245627	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF697	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001984C37	ArrayExpress:VIT_14s0108g01010
EnsemblPlantsGene:VIT_14s0108g01010	EnsemblPlants:VIT_14s0108g01010.t01	RefSeq:XP_002278520	RefSeq:XP_002278520.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:29640510..29642780

Molecular Weight (calculated)

51754.8 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.476

Length

476 amino acids

Sequence
(BLAST)

001: MEVPLAFQVC EPHFLVGVMG VGITYFEVVL MLQPSDGVKI EVRASQGGEE VKGREEKRGE GSVVVWVSVK KPTLVLAASK LDSTFCHQEN DGMAKQCHIY
101: KPFSPSSSMG VFEDMGSLSI SPSYGAYCCK SSDQRGLHMG FPLMGNCSSS LDDTQNSEGG GGDGKGSETS DGFGENSGVA MEIINKGINL NEERPNESSG
201: LDGGQSKLCA RGHWRPAEDS KLRELVALYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE EERLMAAHRW YGNKWAMIAR LFPGRTDNAV
301: KNHWHVIMAR KYREQSSAYR RRKMNQAAHK KLEVGGGSYV CRDTSIRTEH NSLNVCNGNN FIKSSHHFPF AAHMGGGGSI INGSHMTSSE EAVSSGGGDW
401: LVGASSSSNT MLPPHHTGPC PSQTPFHFLS DSVASTSQVS VSEPSSSTSA AENMANTHFE ATISPPFIDF LGVGAT

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.