Factsheet for VIT_18s0001g11170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37830	Soybean	nucleus	41.92	67.61
KRH51945	Soybean	nucleus	61.14	63.35
PGSC0003DMT400020635	Potato	nucleus	69.0	62.95
KRH61246	Soybean	nucleus	57.64	62.86
Solyc04g079360.1.1	Tomato	nucleus	68.56	62.3
KRH05732	Soybean	nucleus	52.84	48.99
VIT_13s0067g01360.t01	Wine grape	nucleus	41.05	37.15
VIT_18s0001g09850.t01	Wine grape	nucleus	42.79	31.31
VIT_03s0180g00210.t01	Wine grape	nucleus	41.05	31.02
VIT_07s0129g01050.t01	Wine grape	nucleus	41.92	30.77
VIT_17s0000g01890.t01	Wine grape	nucleus	24.89	25.79
VIT_04s0044g01380.t01	Wine grape	nucleus	28.82	21.85
VIT_13s0019g03200.t01	Wine grape	nucleus	35.81	21.69
VIT_08s0007g01540.t01	Wine grape	nucleus	37.55	20.98
VIT_18s0001g15260.t01	Wine grape	nucleus	28.38	20.25
VIT_01s0026g02600.t01	Wine grape	nucleus	30.57	15.32
VIT_08s0056g01190.t01	Wine grape	golgi	29.69	15.25
VIT_14s0108g01010.t01	Wine grape	nucleus	27.95	13.45

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250670	wikigene:100250670	MapMan:15.5.2.1	ProteinID:CCB45878	ProteinID:CCB45878.1
UniProt:F6H1E3	EMBL:FN595227	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100250670	wikigene:LOC100250670	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF611	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00021083AF	ArrayExpress:VIT_18s0001g11170
EnsemblPlantsGene:VIT_18s0001g11170	EnsemblPlants:VIT_18s0001g11170.t01	RefSeq:XP_002284237	RefSeq:XP_002284237.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:9482136..9483000

Molecular Weight (calculated)

25613.7 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.822

Length

229 amino acids

Sequence
(BLAST)

001: MEATNRCSSY TSSSDSSSSE SSLSGKQPNK SERIKGSWSA EEDRVLTRLV ERYGARNWSL ISRYIKGRSG KSCRLRWCNQ LSPSVEHRPF SAAEDDTILA
101: AHARYGNRWA TIARLLPGRT DNAVKNHWNS TLKKRQREQS QQMEGPSGSG SYPDMEPDPI TTLSLAPPGA HGSTPEERRA ESFPEGFWDA MRGVIAREYS
201: TTTVEVEGLK QLSDTFLTLS VESMLRFQS

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.