Factsheet for VIT_17s0000g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21728	Canola	nucleus	46.15	64.97
CDY35992	Canola	nucleus	45.7	64.33
KRH38975	Soybean	nucleus	64.25	59.92
KRH09502	Soybean	nucleus	62.9	59.4
GSMUA_Achr9P29090_001	Banana	nucleus	56.11	59.05
CDX83880	Canola	nucleus	46.15	56.04
PGSC0003DMT400079714	Potato	nucleus	61.54	55.74
CDX72988	Canola	nucleus	56.56	55.31
CDX96475	Canola	nucleus	57.01	55.26
Bra015992.1-P	Field mustard	nucleus	57.01	55.26
CDX82074	Canola	nucleus	57.92	54.94
Bra031008.1-P	Field mustard	nucleus	61.09	54.66
CDX96742	Canola	nucleus	59.73	54.55
CDX81853	Canola	nucleus	60.63	54.25
Bra016575.1-P	Field mustard	nucleus	59.28	54.13
CDY58312	Canola	nucleus	56.56	53.42
Bra008096.1-P	Field mustard	nucleus	56.56	53.42
AT1G17950.1	Thale cress	nucleus	60.18	53.41
CDY21727	Canola	nucleus	60.18	52.99
EER93554	Sorghum	nucleus	57.01	52.72
AT1G73410.1	Thale cress	nucleus	57.47	52.26
Os03t0720800-01	Rice	nucleus	57.47	51.84
Zm00001d013399_P001	Maize	nucleus	56.11	51.67
HORVU4Hr1G008640.1	Barley	nucleus	56.11	51.03
Zm00001d033815_P001	Maize	nucleus	57.01	50.81
TraesCS4B01G052400.2	Wheat	nucleus	56.11	49.8
TraesCS4D01G052600.1	Wheat	nucleus	55.2	48.8
TraesCS4A01G262500.3	Wheat	nucleus	56.11	44.93
VIT_04s0044g01380.t01	Wine grape	nucleus	48.87	35.76
VIT_18s0001g15260.t01	Wine grape	nucleus	49.32	33.96
VIT_18s0001g11170.t01	Wine grape	nucleus	25.79	24.89
VIT_13s0067g01360.t01	Wine grape	nucleus	27.6	24.11
VIT_08s0056g01190.t01	Wine grape	golgi	47.51	23.54
VIT_01s0026g02600.t01	Wine grape	nucleus	47.96	23.19
VIT_14s0108g01010.t01	Wine grape	nucleus	47.06	21.85
VIT_07s0129g01050.t01	Wine grape	nucleus	29.86	21.15
VIT_18s0001g09850.t01	Wine grape	nucleus	29.86	21.09
VIT_03s0180g00210.t01	Wine grape	nucleus	27.6	20.13
VIT_13s0019g03200.t01	Wine grape	nucleus	30.32	17.72
VIT_08s0007g01540.t01	Wine grape	nucleus	30.77	16.59

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100257738	wikigene:100257738	MapMan:15.5.2.1	EMBL:AM482722	ProteinID:CAN83952
ProteinID:CAN83952.1	ProteinID:CBI15616	ProteinID:CBI15616.3	ncoils:Coil	UniProt:D7SGT6	EMBL:FN594950
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100257738	wikigene:LOC100257738
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF578	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00019850CE	ArrayExpress:VIT_17s0000g01890	EnsemblPlantsGene:VIT_17s0000g01890	EnsemblPlants:VIT_17s0000g01890.t01
RefSeq:XP_002279279	RefSeq:XP_002279279.1	:	:	:	:

Description

No Description!

Coordinates

chr17:+:1475025..1475958

Molecular Weight (calculated)

26008.5 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.946

Length

221 amino acids

Sequence
(BLAST)

001: MCTRGHWRPA EDEKLRELVE RHGPHNWNAI AEKLPGRSGK SCRLRWFNQL DPRINRAPFT EEEEERLLAS HRIHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCREKSK FYAKRAAQSW INERKSISKP DRQQMIGCDT RNLSSYVENC YENMIHCTKM LEDRTQPVEF YDFLNVNTDS NRSEVIDHAR RDDEEVEQEA
201: MDHQSKAGVP FIDFLSVGSS S

Best Arabidopsis Sequence Match ( AT1G73410.1 )
(BLAST)

001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS

Arabidopsis Description

ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.