Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G052600.1 | Wheat | nucleus | 93.57 | 93.2 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 90.76 | 93.0 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 90.76 | 81.88 |
| Os03t0720800-01 | Rice | nucleus | 77.51 | 78.78 |
| EER93554 | Sorghum | nucleus | 75.5 | 78.66 |
| Zm00001d033815_P001 | Maize | nucleus | 74.7 | 75.0 |
| Zm00001d013399_P001 | Maize | nucleus | 70.68 | 73.33 |
| CDY35992 | Canola | nucleus | 39.36 | 62.42 |
| CDY21728 | Canola | nucleus | 38.55 | 61.15 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 49.4 | 58.57 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 49.8 | 56.11 |
| CDX83880 | Canola | nucleus | 38.96 | 53.3 |
| KRH38975 | Soybean | nucleus | 48.19 | 50.63 |
| KRH09502 | Soybean | nucleus | 46.59 | 49.57 |
| PGSC0003DMT400079714 | Potato | nucleus | 47.39 | 48.36 |
| CDX72988 | Canola | nucleus | 43.78 | 48.23 |
| CDX96475 | Canola | nucleus | 43.78 | 47.81 |
| Bra015992.1-P | Field mustard | nucleus | 43.78 | 47.81 |
| CDX81853 | Canola | nucleus | 46.59 | 46.96 |
| Bra031008.1-P | Field mustard | nucleus | 46.59 | 46.96 |
| CDX96742 | Canola | nucleus | 45.38 | 46.69 |
| Bra016575.1-P | Field mustard | nucleus | 45.38 | 46.69 |
| AT1G17950.1 | Thale cress | nucleus | 46.59 | 46.59 |
| CDX82074 | Canola | nucleus | 43.37 | 46.35 |
| CDY21727 | Canola | nucleus | 46.59 | 46.22 |
| CDY58312 | Canola | nucleus | 42.97 | 45.73 |
| Bra008096.1-P | Field mustard | nucleus | 42.97 | 45.73 |
| AT1G73410.1 | Thale cress | nucleus | 44.18 | 45.27 |
| TraesCS4B01G105200.1 | Wheat | nucleus | 38.55 | 34.91 |
| TraesCS3B01G217100.1 | Wheat | nucleus | 40.16 | 31.95 |
| TraesCS3B01G473600.1 | Wheat | nucleus | 36.55 | 25.71 |
| TraesCS7B01G444000.1 | Wheat | nucleus | 27.31 | 23.61 |
| TraesCS6B01G201700.1 | Wheat | nucleus | 26.51 | 22.53 |
| TraesCS7B01G443900.1 | Wheat | nucleus | 26.51 | 22.15 |
| TraesCS7B01G443800.1 | Wheat | nucleus | 26.1 | 22.03 |
| TraesCS4B01G299000.1 | Wheat | nucleus | 22.89 | 22.01 |
| TraesCS1B01G236900.1 | Wheat | nucleus | 23.29 | 19.14 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 24.9 | 18.51 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 25.7 | 13.68 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G052400.2 | EnsemblPlantsGene:TraesCS4B01G052400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF578 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:41197202..41198533
Molecular Weight (calculated)
28362.1 Da
IEP (calculated)
6.932
GRAVY (calculated)
-0.857
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTRGHWRPS EDERLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCRERMR LSSNRRATPA AASTTTAGAE KDDSPRNTTG GEKPRLPEAN TMAALLHKYR REFAAPFAIS RHSSKEGYCS STNEDTNRSV EFYDFLQVNV
201: SSSDTKCGSS IEEQEENRDE GDQQAEGQVS LIDFMELVML CEEAGACDM
101: MARRCRERMR LSSNRRATPA AASTTTAGAE KDDSPRNTTG GEKPRLPEAN TMAALLHKYR REFAAPFAIS RHSSKEGYCS STNEDTNRSV EFYDFLQVNV
201: SSSDTKCGSS IEEQEENRDE GDQQAEGQVS LIDFMELVML CEEAGACDM
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.