Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008096.1-P | Field mustard | nucleus | 95.71 | 95.3 |
| CDY58312 | Canola | nucleus | 95.71 | 95.3 |
| CDX96475 | Canola | nucleus | 86.27 | 88.16 |
| CDX72988 | Canola | nucleus | 85.41 | 88.05 |
| AT1G73410.1 | Thale cress | nucleus | 84.12 | 80.66 |
| CDY21728 | Canola | nucleus | 48.93 | 72.61 |
| CDY35992 | Canola | nucleus | 48.93 | 72.61 |
| CDX83880 | Canola | nucleus | 53.22 | 68.13 |
| CDX96742 | Canola | nucleus | 63.95 | 61.57 |
| CDX81853 | Canola | nucleus | 65.24 | 61.54 |
| CDY21727 | Canola | nucleus | 64.81 | 60.16 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 54.94 | 57.92 |
| KRH09502 | Soybean | nucleus | 54.94 | 54.7 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 48.5 | 53.81 |
| KRH38975 | Soybean | nucleus | 54.08 | 53.16 |
| PGSC0003DMT400079714 | Potato | nucleus | 52.36 | 50.0 |
| EER93554 | Sorghum | nucleus | 48.07 | 46.86 |
| Os03t0720800-01 | Rice | nucleus | 48.5 | 46.12 |
| Zm00001d013399_P001 | Maize | nucleus | 46.78 | 45.42 |
| Zm00001d033815_P001 | Maize | nucleus | 48.07 | 45.16 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 46.78 | 44.86 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 46.35 | 43.37 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 46.35 | 43.2 |
| CDY71713 | Canola | nucleus | 40.77 | 41.3 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 48.07 | 40.58 |
| CDX75353 | Canola | nucleus | 42.49 | 39.44 |
| CDX68977 | Canola | nucleus | 42.06 | 39.2 |
| CDY28302 | Canola | nucleus | 42.06 | 39.04 |
| CDY46114 | Canola | nucleus | 39.06 | 37.76 |
| CDX72405 | Canola | nucleus | 38.63 | 37.34 |
| CDX83109 | Canola | nucleus | 23.18 | 33.33 |
| CDY44415 | Canola | nucleus | 37.34 | 33.33 |
| CDY30264 | Canola | nucleus | 36.91 | 33.08 |
| CDY69058 | Canola | nucleus | 36.91 | 32.58 |
| CDX85443 | Canola | nucleus | 42.49 | 32.25 |
| CDY67808 | Canola | nucleus | 21.89 | 32.08 |
| CDY02687 | Canola | nucleus | 42.49 | 31.94 |
| CDY16884 | Canola | nucleus | 41.63 | 31.09 |
| CDX78761 | Canola | nucleus | 41.63 | 30.99 |
| CDY67868 | Canola | nucleus | 39.48 | 30.87 |
| CDY07345 | Canola | nucleus | 39.48 | 30.87 |
| CDX70776 | Canola | nucleus | 41.2 | 30.67 |
| CDY40941 | Canola | nucleus | 41.63 | 30.31 |
| CDY38460 | Canola | nucleus | 41.63 | 29.94 |
| CDX95921 | Canola | nucleus | 40.77 | 29.69 |
| CDY20004 | Canola | nucleus | 36.48 | 29.62 |
| CDY66025 | Canola | nucleus | 36.48 | 29.51 |
| CDY50737 | Canola | nucleus | 43.35 | 29.36 |
| CDY44993 | Canola | nucleus | 42.92 | 28.33 |
| CDY46444 | Canola | nucleus | 42.49 | 28.05 |
| CDY66170 | Canola | nucleus | 36.91 | 27.39 |
| CDY12830 | Canola | nucleus | 27.47 | 25.3 |
| CDY01420 | Canola | nucleus | 27.47 | 24.33 |
| CDX74436 | Canola | nucleus | 37.34 | 24.1 |
| CDY30608 | Canola | nucleus | 26.61 | 23.4 |
| CDY57355 | Canola | nucleus | 26.61 | 22.3 |
| CDY23023 | Canola | nucleus | 27.47 | 22.07 |
| CDX72621 | Canola | nucleus | 24.89 | 21.89 |
| CDY02098 | Canola | nucleus | 27.47 | 21.84 |
| CDY29542 | Canola | nucleus | 24.46 | 21.51 |
| CDY22442 | Canola | nucleus | 25.32 | 21.45 |
| CDY44045 | Canola | nucleus | 24.89 | 20.35 |
| CDY38933 | Canola | nucleus | 25.32 | 20.21 |
| CDX89554 | Canola | nucleus | 25.32 | 20.14 |
| CDX73963 | Canola | nucleus | 28.76 | 20.0 |
| CDY07907 | Canola | nucleus | 28.33 | 19.88 |
| CDX75635 | Canola | nucleus | 25.32 | 19.73 |
| CDX69287 | Canola | nucleus | 25.32 | 19.28 |
| CDX68566 | Canola | nucleus | 24.89 | 18.47 |
| CDY43567 | Canola | nucleus | 17.17 | 18.43 |
| CDY20494 | Canola | nucleus | 26.61 | 16.85 |
| CDY27271 | Canola | nucleus | 26.61 | 16.62 |
| CDX72208 | Canola | nucleus | 26.18 | 16.58 |
| CDX74825 | Canola | nucleus | 27.47 | 15.96 |
| CDY70901 | Canola | nucleus | 14.59 | 11.89 |
| CDY70773 | Canola | nucleus | 14.59 | 11.89 |
| CDX83108 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX82074 | EnsemblPlantsGene:GSBRNA2T00137098001 | Gene3D:1.10.10.60 | GO:A0A078D1H5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX82074 | ProteinID:CDX82074.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF4C21 | MapMan:15.5.2.1 | : |
Description
BnaC02g22160D
Coordinates
chrLK031827:-:442479..443614
Molecular Weight (calculated)
27111.9 Da
IEP (calculated)
9.684
GRAVY (calculated)
-0.821
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSRGHWRPA EDEKLKDLVE QYGPHNWNAI ALKLPGRSGK SCRLRWFNQL DPRINRNPFT EEEEERLLAA HRIHGNRWSI IARLFPGRTD NAVKNHWHVI
101: MARRTRQTSK PRILTSTTSS LLATDQIMMA SGDRKRILGD GISYAYQFSH INHLQFLEEF FTQKIAFNTK DAMVANQSKK PVEFYNFLQV DMDSNKSENI
201: DQDSDQSNPH DSDNKKESRV PFFDFLSVKN STS
101: MARRTRQTSK PRILTSTTSS LLATDQIMMA SGDRKRILGD GISYAYQFSH INHLQFLEEF FTQKIAFNTK DAMVANQSKK PVEFYNFLQV DMDSNKSENI
201: DQDSDQSNPH DSDNKKESRV PFFDFLSVKN STS
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
Arabidopsis Description
ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.