Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006422.1-P | Field mustard | nucleus | 99.04 | 99.04 |
| CDX70776 | Canola | nucleus | 96.81 | 96.81 |
| CDX85443 | Canola | nucleus | 74.44 | 75.9 |
| CDY16884 | Canola | nucleus | 75.08 | 75.32 |
| CDY02687 | Canola | nucleus | 73.48 | 74.19 |
| CDY38460 | Canola | nucleus | 76.68 | 74.07 |
| AT5G17800.1 | Thale cress | nucleus | 75.08 | 72.76 |
| CDY69058 | Canola | nucleus | 57.51 | 68.18 |
| CDY35992 | Canola | nucleus | 26.84 | 53.5 |
| CDY21728 | Canola | nucleus | 25.88 | 51.59 |
| CDX83880 | Canola | nucleus | 27.16 | 46.7 |
| CDX96475 | Canola | nucleus | 30.99 | 42.54 |
| CDX72988 | Canola | nucleus | 30.67 | 42.48 |
| CDX82074 | Canola | nucleus | 30.99 | 41.63 |
| CDX96742 | Canola | nucleus | 31.95 | 41.32 |
| CDY58312 | Canola | nucleus | 30.67 | 41.03 |
| CDY21727 | Canola | nucleus | 32.59 | 40.64 |
| CDX81853 | Canola | nucleus | 31.95 | 40.49 |
| CDY71713 | Canola | nucleus | 27.8 | 37.83 |
| CDX75353 | Canola | nucleus | 30.03 | 37.45 |
| CDX68977 | Canola | nucleus | 29.71 | 37.2 |
| PGSC0003DMT400072258 | Potato | nucleus | 37.7 | 36.76 |
| CDX72405 | Canola | nucleus | 28.11 | 36.51 |
| CDY46114 | Canola | nucleus | 27.8 | 36.1 |
| Solyc10g081320.1.1 | Tomato | nucleus | 36.74 | 36.05 |
| CDY28302 | Canola | nucleus | 28.75 | 35.86 |
| CDY67808 | Canola | nucleus | 18.21 | 35.85 |
| CDY30264 | Canola | nucleus | 29.39 | 35.38 |
| CDY67868 | Canola | nucleus | 31.95 | 33.56 |
| CDY07345 | Canola | nucleus | 31.95 | 33.56 |
| CDY44415 | Canola | nucleus | 27.48 | 32.95 |
| KRG94926 | Soybean | nucleus | 38.66 | 32.01 |
| CDY40941 | Canola | nucleus | 32.59 | 31.88 |
| CDX95921 | Canola | nucleus | 32.27 | 31.56 |
| KRH64970 | Soybean | nucleus | 39.94 | 30.86 |
| CDY20004 | Canola | nucleus | 28.11 | 30.66 |
| CDX83109 | Canola | nucleus | 15.65 | 30.25 |
| CDY66025 | Canola | nucleus | 27.8 | 30.21 |
| CDY50737 | Canola | nucleus | 31.95 | 29.07 |
| CDY44993 | Canola | nucleus | 32.59 | 28.9 |
| CDY46444 | Canola | nucleus | 32.27 | 28.61 |
| CDY66170 | Canola | nucleus | 28.43 | 28.34 |
| VIT_08s0056g01190.t01 | Wine grape | golgi | 38.66 | 27.13 |
| CDX74436 | Canola | nucleus | 29.39 | 25.48 |
| CDX72621 | Canola | nucleus | 21.09 | 24.91 |
| CDY29542 | Canola | nucleus | 20.77 | 24.53 |
| CDY12830 | Canola | nucleus | 19.81 | 24.51 |
| CDY22442 | Canola | nucleus | 21.41 | 24.36 |
| CDY44045 | Canola | nucleus | 21.73 | 23.86 |
| CDY01420 | Canola | nucleus | 19.81 | 23.57 |
| CDX75635 | Canola | nucleus | 22.04 | 23.08 |
| CDX89554 | Canola | nucleus | 21.41 | 22.87 |
| CDY38933 | Canola | nucleus | 21.09 | 22.6 |
| CDX69287 | Canola | nucleus | 22.04 | 22.55 |
| CDY30608 | Canola | nucleus | 18.53 | 21.89 |
| CDY57355 | Canola | nucleus | 19.17 | 21.58 |
| CDY23023 | Canola | nucleus | 19.49 | 21.03 |
| CDY02098 | Canola | nucleus | 19.49 | 20.82 |
| CDX73963 | Canola | nucleus | 20.45 | 19.1 |
| CDY07907 | Canola | nucleus | 20.13 | 18.98 |
| CDY20494 | Canola | nucleus | 21.73 | 18.48 |
| CDY43567 | Canola | nucleus | 12.78 | 18.43 |
| CDX68566 | Canola | nucleus | 17.57 | 17.52 |
| CDX74825 | Canola | nucleus | 22.36 | 17.46 |
| CDX72208 | Canola | nucleus | 20.45 | 17.39 |
| CDY27271 | Canola | nucleus | 20.45 | 17.16 |
| CDY70773 | Canola | nucleus | 10.22 | 11.19 |
| CDY70901 | Canola | nucleus | 10.22 | 11.19 |
| CDX83108 | Canola | cytosol | 0.64 | 5.13 |
Protein Annotations
| EnsemblPlants:CDX78761 | EnsemblPlantsGene:GSBRNA2T00130200001 | Gene3D:1.10.10.60 | GO:A0A078CNI2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF941 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX78761 | ProteinID:CDX78761.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE159A | MapMan:15.5.2.1 | : |
Description
BnaA03g06730D
Coordinates
chrLK031815:+:2124096..2125934
Molecular Weight (calculated)
35465.6 Da
IEP (calculated)
10.073
GRAVY (calculated)
-0.842
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKLIEKVL IGNKTIKLSR RFEEANNFGS PPNSHTNLSL ARNHLHNKSY SVLERGENEN SLKRRGNNGM NKKLCSRGHW RPTEDAKLKE LVTQFGPQNW
101: NLIAHHLLGR SGKSCRLRWC NQLDPRINKK AFTEEEESRL LTAHRAYGNK WSLISRFFPG RTDNAVKNHW HVVMARRTRA SERQQALHAP SGNAEMTVSS
201: VYRYNRGGFF GRVAEGTLVN EADDDDGSAV STCTTELSLT PPSSTHQPRF LHDDNTLASG KDGQCVQRAE VNGIYSKKMD HQNHHTTTVS EREVEMKTKS
301: GFYFFDFLGV GAS
101: NLIAHHLLGR SGKSCRLRWC NQLDPRINKK AFTEEEESRL LTAHRAYGNK WSLISRFFPG RTDNAVKNHW HVVMARRTRA SERQQALHAP SGNAEMTVSS
201: VYRYNRGGFF GRVAEGTLVN EADDDDGSAV STCTTELSLT PPSSTHQPRF LHDDNTLASG KDGQCVQRAE VNGIYSKKMD HQNHHTTTVS EREVEMKTKS
301: GFYFFDFLGV GAS
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
Arabidopsis Description
MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.