Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001323.1-P | Field mustard | nucleus | 96.42 | 96.42 |
| CDY07907 | Canola | nucleus | 94.03 | 94.88 |
| CDY70901 | Canola | nucleus | 67.46 | 79.02 |
| CDY70773 | Canola | nucleus | 67.16 | 78.67 |
| AT3G09230.1 | Thale cress | nucleus | 74.33 | 63.36 |
| CDX83109 | Canola | nucleus | 20.9 | 43.21 |
| CDY21728 | Canola | nucleus | 17.61 | 37.58 |
| CDY35992 | Canola | nucleus | 17.31 | 36.94 |
| CDY20494 | Canola | nucleus | 37.31 | 33.97 |
| CDY27271 | Canola | nucleus | 37.61 | 33.78 |
| CDX72208 | Canola | nucleus | 37.01 | 33.7 |
| CDX83880 | Canola | nucleus | 18.21 | 33.52 |
| CDY22442 | Canola | nucleus | 26.27 | 32.0 |
| CDY30608 | Canola | nucleus | 25.07 | 31.7 |
| CDX74825 | Canola | nucleus | 37.91 | 31.67 |
| CDY44045 | Canola | nucleus | 26.87 | 31.58 |
| CDX75635 | Canola | nucleus | 28.06 | 31.44 |
| CDX72621 | Canola | nucleus | 24.78 | 31.32 |
| CDY29542 | Canola | nucleus | 24.78 | 31.32 |
| CDY12830 | Canola | nucleus | 23.58 | 31.23 |
| CDY57355 | Canola | nucleus | 25.67 | 30.94 |
| CDX69287 | Canola | nucleus | 28.06 | 30.72 |
| CDY01420 | Canola | nucleus | 23.88 | 30.42 |
| CDY23023 | Canola | nucleus | 26.27 | 30.34 |
| CDY38933 | Canola | nucleus | 26.27 | 30.14 |
| CDY02098 | Canola | nucleus | 26.27 | 30.03 |
| CDX89554 | Canola | nucleus | 25.97 | 29.69 |
| CDX96475 | Canola | nucleus | 19.7 | 28.95 |
| CDX72988 | Canola | nucleus | 19.4 | 28.76 |
| CDX82074 | Canola | nucleus | 20.0 | 28.76 |
| CDY58312 | Canola | nucleus | 20.0 | 28.63 |
| CDX81853 | Canola | nucleus | 20.6 | 27.94 |
| CDX96742 | Canola | nucleus | 20.0 | 27.69 |
| CDY21727 | Canola | nucleus | 20.3 | 27.09 |
| CDY71713 | Canola | nucleus | 18.51 | 26.96 |
| CDX68566 | Canola | nucleus | 23.88 | 25.48 |
| CDY30264 | Canola | nucleus | 19.7 | 25.38 |
| CDX72405 | Canola | nucleus | 17.91 | 24.9 |
| CDY46114 | Canola | nucleus | 17.91 | 24.9 |
| CDY43567 | Canola | nucleus | 16.12 | 24.88 |
| CDX68977 | Canola | nucleus | 18.51 | 24.8 |
| CDX75353 | Canola | nucleus | 18.51 | 24.7 |
| CDY28302 | Canola | nucleus | 18.21 | 24.3 |
| CDY44415 | Canola | nucleus | 17.91 | 22.99 |
| CDY67808 | Canola | nucleus | 10.45 | 22.01 |
| CDY67868 | Canola | nucleus | 19.1 | 21.48 |
| CDY07345 | Canola | nucleus | 18.81 | 21.14 |
| CDY40941 | Canola | nucleus | 20.0 | 20.94 |
| CDY20004 | Canola | nucleus | 17.91 | 20.91 |
| CDY66025 | Canola | nucleus | 17.91 | 20.83 |
| CDX78761 | Canola | nucleus | 19.1 | 20.45 |
| CDX70776 | Canola | nucleus | 19.1 | 20.45 |
| CDX95921 | Canola | nucleus | 19.4 | 20.31 |
| CDY16884 | Canola | nucleus | 18.81 | 20.19 |
| CDY69058 | Canola | nucleus | 15.52 | 19.7 |
| CDY02687 | Canola | nucleus | 18.21 | 19.68 |
| CDX85443 | Canola | nucleus | 17.91 | 19.54 |
| CDY38460 | Canola | nucleus | 18.81 | 19.44 |
| CDY44993 | Canola | nucleus | 20.3 | 19.26 |
| CDY50737 | Canola | nucleus | 19.7 | 19.19 |
| CDY66170 | Canola | nucleus | 17.91 | 19.11 |
| CDY46444 | Canola | nucleus | 20.0 | 18.98 |
| CDX74436 | Canola | nucleus | 19.7 | 18.28 |
| CDX83108 | Canola | cytosol | 1.19 | 10.26 |
Protein Annotations
| EnsemblPlants:CDX73963 | EnsemblPlantsGene:GSBRNA2T00111694001 | Gene3D:1.10.10.60 | GO:A0A078CG42 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX73963 | ProteinID:CDX73963.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDAE5C | MapMan:15.5.2.1 | : | : |
Description
BnaA03g30840D
Coordinates
chrLK031800:+:721737..723619
Molecular Weight (calculated)
36743.1 Da
IEP (calculated)
6.595
GRAVY (calculated)
-0.518
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRGKERVK VAWSAEEDVV LSNLVEKFGP RNWSLLARSV PGRTGKSCRL RWCNQLDPSL KRNPFTEVED QAIITAHGIH GNKWSVIAKL LPGRTDNAIK
101: NHWNATLSRR CMDFEMLTTN NLVPEDSGFD RTMNTIAASS EETFSSGGGV HVTTPLVSSD GKEATSMDMS EQQCEDKTNE EGNNDPPTLF RPVASLSSFN
201: AYNHMEGSSF SKFQSCKQDA AMLRLLEGAY SERFVPQKCG HGCCSDSPVD ISKQNSLLGP EFVDHLDPPT FPSYELAAIA TEISSLAWLR SGLESSSVRA
301: MEEAAGRLRP QGSRGHRDHC LASKQGKSIT NVLST
101: NHWNATLSRR CMDFEMLTTN NLVPEDSGFD RTMNTIAASS EETFSSGGGV HVTTPLVSSD GKEATSMDMS EQQCEDKTNE EGNNDPPTLF RPVASLSSFN
201: AYNHMEGSSF SKFQSCKQDA AMLRLLEGAY SERFVPQKCG HGCCSDSPVD ISKQNSLLGP EFVDHLDPPT FPSYELAAIA TEISSLAWLR SGLESSSVRA
301: MEEAAGRLRP QGSRGHRDHC LASKQGKSIT NVLST
001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
Arabidopsis Description
MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.