Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032176.1-P | Field mustard | nucleus | 99.32 | 99.32 |
| CDX89554 | Canola | nucleus | 97.6 | 97.27 |
| AT2G23290.1 | Thale cress | nucleus | 78.08 | 73.79 |
| CDX75635 | Canola | nucleus | 72.26 | 70.57 |
| CDY22442 | Canola | nucleus | 65.41 | 69.45 |
| CDY44045 | Canola | nucleus | 67.47 | 69.12 |
| CDX72621 | Canola | nucleus | 62.33 | 68.68 |
| CDX69287 | Canola | nucleus | 70.89 | 67.65 |
| CDY29542 | Canola | nucleus | 60.96 | 67.17 |
| CDX83109 | Canola | nucleus | 30.48 | 54.94 |
| CDY12830 | Canola | nucleus | 46.58 | 53.75 |
| CDY01420 | Canola | nucleus | 47.6 | 52.85 |
| KRH28419 | Soybean | nucleus | 53.42 | 52.53 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 55.82 | 52.24 |
| CDY30608 | Canola | nucleus | 47.26 | 52.08 |
| KRH57983 | Soybean | nucleus | 52.4 | 51.86 |
| CDY57355 | Canola | nucleus | 49.32 | 51.8 |
| KRH77058 | Soybean | nucleus | 53.42 | 51.15 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 54.45 | 50.8 |
| CDY23023 | Canola | nucleus | 50.0 | 50.34 |
| CDY02098 | Canola | nucleus | 49.32 | 49.15 |
| CDY43567 | Canola | nucleus | 35.96 | 48.39 |
| Zm00001d005300_P001 | Maize | nucleus | 46.23 | 47.37 |
| Os09t0106700-01 | Rice | nucleus | 51.37 | 47.02 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 52.4 | 45.67 |
| Solyc02g092930.1.1 | Tomato | nucleus | 56.16 | 45.43 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 57.19 | 45.01 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 51.71 | 44.94 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 51.71 | 44.02 |
| Zm00001d019712_P001 | Maize | nucleus | 51.71 | 43.77 |
| EER98550 | Sorghum | nucleus | 52.4 | 41.8 |
| CDX68566 | Canola | nucleus | 41.44 | 38.53 |
| HORVU5Hr1G049880.1 | Barley | plastid | 51.37 | 35.38 |
| CDY35992 | Canola | nucleus | 18.84 | 35.03 |
| CDY21728 | Canola | nucleus | 18.84 | 35.03 |
| CDX83108 | Canola | cytosol | 4.11 | 30.77 |
| CDX83880 | Canola | nucleus | 18.49 | 29.67 |
| CDY07907 | Canola | nucleus | 30.14 | 26.51 |
| CDX73963 | Canola | nucleus | 30.14 | 26.27 |
| CDY71713 | Canola | nucleus | 20.55 | 26.09 |
| CDX96475 | Canola | nucleus | 20.21 | 25.88 |
| CDX72988 | Canola | nucleus | 19.86 | 25.66 |
| CDX68977 | Canola | nucleus | 21.92 | 25.6 |
| CDX75353 | Canola | nucleus | 21.92 | 25.5 |
| CDX82074 | Canola | nucleus | 20.21 | 25.32 |
| CDX72405 | Canola | nucleus | 20.89 | 25.31 |
| CDY58312 | Canola | nucleus | 20.21 | 25.21 |
| CDY46114 | Canola | nucleus | 20.55 | 24.9 |
| CDX72208 | Canola | nucleus | 31.16 | 24.73 |
| CDY28302 | Canola | nucleus | 21.23 | 24.7 |
| CDY27271 | Canola | nucleus | 31.51 | 24.66 |
| CDY44415 | Canola | nucleus | 21.92 | 24.52 |
| CDY20494 | Canola | nucleus | 30.82 | 24.46 |
| CDY67808 | Canola | nucleus | 13.01 | 23.9 |
| CDY30264 | Canola | nucleus | 21.23 | 23.85 |
| CDY21727 | Canola | nucleus | 19.86 | 23.11 |
| CDX81853 | Canola | nucleus | 19.52 | 23.08 |
| CDX96742 | Canola | nucleus | 18.84 | 22.73 |
| CDY20004 | Canola | nucleus | 22.26 | 22.65 |
| CDY07345 | Canola | nucleus | 22.95 | 22.48 |
| CDX74825 | Canola | nucleus | 30.82 | 22.44 |
| CDY69058 | Canola | nucleus | 20.21 | 22.35 |
| CDY66025 | Canola | nucleus | 21.92 | 22.22 |
| CDY67868 | Canola | nucleus | 22.6 | 22.15 |
| CDY16884 | Canola | nucleus | 23.63 | 22.12 |
| CDY02687 | Canola | nucleus | 22.95 | 21.61 |
| CDY38460 | Canola | nucleus | 23.97 | 21.6 |
| CDX85443 | Canola | nucleus | 22.26 | 21.17 |
| CDX78761 | Canola | nucleus | 22.6 | 21.09 |
| CDX70776 | Canola | nucleus | 22.6 | 21.09 |
| CDY40941 | Canola | nucleus | 22.6 | 20.62 |
| CDX95921 | Canola | nucleus | 22.6 | 20.62 |
| CDY66170 | Canola | nucleus | 21.58 | 20.06 |
| CDY70901 | Canola | nucleus | 19.52 | 19.93 |
| CDY70773 | Canola | nucleus | 19.52 | 19.93 |
| CDY50737 | Canola | nucleus | 21.92 | 18.6 |
| CDY46444 | Canola | nucleus | 21.92 | 18.13 |
| CDY44993 | Canola | nucleus | 21.92 | 18.13 |
| CDX74436 | Canola | nucleus | 20.89 | 16.9 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078HQ86 | UniProt:A0A078HQ86 | EnsemblPlants:CDY38933 | ProteinID:CDY38933 |
| ProteinID:CDY38933.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00066976001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF691 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE3079 | SEG:seg |
Description
BnaA04g13540DBnaA04g13540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ86]
Coordinates
chrLK032435:-:117205..118083
Molecular Weight (calculated)
31357.9 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.563
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSTRKETD RIKGPWSPEE DQLLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS PEVEHRAFSP EEDEMILLAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGW TSDDGGNGGY DGSLTDEQPL KRTASGGGGG GGVVSTGLFM SPGSPSGSDV SEQSSGPVSH VYKPKARAGG VVIESAVKDP
201: ATSLSLSLPW VNESTKGRDT AELFPARKQE EERGTFSGEF MTVVQEMIKT EVRSYMAELQ LGIGGGGSSC MVQGVNGPSV GFRNFIEIVK IE
101: AIKNHWNSTL KRKCSGGGGW TSDDGGNGGY DGSLTDEQPL KRTASGGGGG GGVVSTGLFM SPGSPSGSDV SEQSSGPVSH VYKPKARAGG VVIESAVKDP
201: ATSLSLSLPW VNESTKGRDT AELFPARKQE EERGTFSGEF MTVVQEMIKT EVRSYMAELQ LGIGGGGSSC MVQGVNGPSV GFRNFIEIVK IE
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.