Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79885 | Canola | nucleus | 91.07 | 91.48 |
| AT2G42260.1 | Thale cress | cytosol | 80.36 | 69.5 |
| CDY22476 | Canola | cytosol | 19.2 | 55.13 |
| CDY06071 | Canola | cytosol | 61.16 | 55.02 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 54.91 | 46.24 |
| KRH67023 | Soybean | nucleus | 44.2 | 46.05 |
| CDX71989 | Canola | plastid | 61.16 | 45.07 |
| CDX98240 | Canola | mitochondrion | 29.02 | 43.05 |
| Solyc10g080400.1.1 | Tomato | nucleus | 44.2 | 42.86 |
| PGSC0003DMT400060963 | Potato | nucleus | 48.66 | 42.75 |
| KRG95339 | Soybean | mitochondrion, plastid | 40.18 | 40.91 |
| CDY08664 | Canola | cytosol | 22.77 | 37.78 |
Protein Annotations
| MapMan:13.3.4.1.5 | UniProt:A0A078IUJ6 | EnsemblPlants:CDY53501 | ProteinID:CDY53501 | ProteinID:CDY53501.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0051783 | GO:GO:1904667 | EnsemblPlantsGene:GSBRNA2T00010836001 |
| InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | UniParc:UPI0004EC86FC | SEG:seg | : |
Description
BnaC04g02550DBnaC04g02550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUJ6]
Coordinates
chrLK033208:+:54180..55305
Molecular Weight (calculated)
25176.4 Da
IEP (calculated)
11.496
GRAVY (calculated)
-0.738
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEARDRRER PVDYPAAFLN RRSHGILLDE PPAHLNPFQS PVQRLPPSES MGRGGFARGN LGVRRRGLGV ARRGRARASA SVLPSWYPRT PLRDVSSVVR
101: AIERRRARMG DVETPTPQQL GVLDDSLAPV SGERNYSMVT PGPSVGFKRP WPPSTAKVHQ ILLDITRQSS AEEEEEALTP QKKLLNSIDK VEKVVMEEIQ
201: KMKSTPSAKR AEREKRVRTL MSMR
101: AIERRRARMG DVETPTPQQL GVLDDSLAPV SGERNYSMVT PGPSVGFKRP WPPSTAKVHQ ILLDITRQSS AEEEEEALTP QKKLLNSIDK VEKVVMEEIQ
201: KMKSTPSAKR AEREKRVRTL MSMR
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Arabidopsis Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.