Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080400.1.1 | Tomato | nucleus | 84.31 | 93.07 |
| VIT_08s0007g07790.t01 | Wine grape | nucleus | 52.16 | 50.0 |
| KRH67023 | Soybean | nucleus | 41.57 | 49.3 |
| CDY53501 | Canola | nucleus | 42.75 | 48.66 |
| Bra004677.1-P | Field mustard | nucleus | 42.35 | 48.43 |
| CDX79885 | Canola | nucleus | 42.35 | 48.43 |
| AT3G57860.1 | Thale cress | cytosol | 43.53 | 45.68 |
| AT2G42260.1 | Thale cress | cytosol | 46.27 | 45.56 |
| KRG95339 | Soybean | mitochondrion, plastid | 39.22 | 45.45 |
| CDY06071 | Canola | cytosol | 39.22 | 40.16 |
| CDY22476 | Canola | cytosol | 12.16 | 39.74 |
| Bra007362.1-P | Field mustard | cytosol | 38.04 | 39.27 |
| CDX98240 | Canola | mitochondrion | 20.78 | 35.1 |
| CDX71989 | Canola | plastid | 38.43 | 32.24 |
| CDY08664 | Canola | cytosol | 14.9 | 28.15 |
Protein Annotations
| EntrezGene:102593365 | MapMan:13.3.4.1.5 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0051783 | GO:GO:1904667 | UniProt:M1C6S5 | EnsemblPlantsGene:PGSC0003DMG402023713 | PGSC:PGSC0003DMG402023713 | EnsemblPlants:PGSC0003DMT400060963 |
| InterPro:POLYCHOME/GIG1 | PANTHER:PTHR35119 | PANTHER:PTHR35119:SF1 | UniParc:UPI000295CD35 | RefSeq:XP_006351336.1 | SEG:seg |
Description
Polychome, UV-B-insensitive 4 [Source:PGSC_GENE;Acc:PGSC0003DMG402023713]
Coordinates
chr10:-:57557361..57561275
Molecular Weight (calculated)
28673.0 Da
IEP (calculated)
11.428
GRAVY (calculated)
-1.024
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGRDRLSR QEDPIDIYSR RRRSMGRGGI EIFEDESPES SSRAPIQTTA ETGRMAGTSG GRGGIGRIGF GSPRNRRGRN SLRTPTRVIG RQNISPAGQG
101: RNRGRHSVLP AWYPRTPLRD ITSIVRAIER TRARLRESEG EQLESVVPQD HTDLGPSEST SGAQLEHTNS LITPRPKTRS RYHTRSVGKV PKILLDITNQ
201: STSEDSECLT PQRKLLNSID TVEKDVMEEL HKLKRTPGAR KEERDKRVKT LMSMR
101: RNRGRHSVLP AWYPRTPLRD ITSIVRAIER TRARLRESEG EQLESVVPQD HTDLGPSEST SGAQLEHTNS LITPRPKTRS RYHTRSVGKV PKILLDITNQ
201: STSEDSECLT PQRKLLNSID TVEKDVMEEL HKLKRTPGAR KEERDKRVKT LMSMR
001: MPEARDRIER QVDYPAAFLN RRSHGILLDE PATQHNLFGS PVQRVPSEAT GGLGSIGQGS MTGRGGLVRG NFGIRRTGGG RRGQIQFRSP QGRENMSLGV
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
101: TRRGRARASN SVLPSWYPRT PLRDISAVVR AIERRRARMG EGVGRDIETP TPQQLGVLDS LVPLSGAHLE HDYSMVTPGP SIGFKRPWPP STAKVHQILL
201: DITRENTGEE DALTPEKKLL NSIDKVEKVV MEEIQKMKST PSAKRAEREK RVRTLMSMR
Arabidopsis Description
PYMProtein POLYCHOME [Source:UniProtKB/Swiss-Prot;Acc:O48533]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.