Factsheet for PGSC0003DMT400062212

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34374	Canola	nucleus	32.17	37.1
PGSC0003DMT400062214	Potato	cytosol	65.03	24.09
CDY08956	Canola	extracellular, golgi	39.86	17.07
GSMUA_Achr8P16370_001	Banana	cytosol	42.66	15.8
GSMUA_Achr10P...	Banana	cytosol	40.56	15.03
CDX92654	Canola	cytosol	40.56	14.99
GSMUA_Achr6P12080_001	Banana	cytosol	39.86	14.77
Bra013838.1-P	Field mustard	cytosol	39.86	14.73
Os04t0485000-01	Rice	plasma membrane	39.86	14.65
AT4G24820.1	Thale cress	cytosol	39.16	14.47
TraesCS2D01G341500.1	Wheat	golgi, unclear	39.16	14.43
TraesCS6D01G195300.1	Wheat	golgi, unclear	39.16	14.18
TraesCS6B01G242700.1	Wheat	cytosol	39.16	14.18
TraesCS2A01G320800.1	Wheat	cytosol	38.46	14.18
Zm00001d017117_P001	Maize	plasma membrane	38.46	14.14
OQU85258	Sorghum	cytosol	38.46	14.14
TraesCS6A01G212300.1	Wheat	cytosol	39.16	13.93
TraesCS2B01G361900.1	Wheat	golgi, plastid	37.76	13.92
HORVU2Hr1G083860.1	Barley	cytosol	37.76	13.92
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	39.86	13.54
KXG26586	Sorghum	cytosol	34.97	12.89
HORVU0Hr1G004970.2	Barley	cytosol	20.28	7.34
Zm00001d003257_P002	Maize	plastid	24.48	6.77
PGSC0003DMT400071374	Potato	cytosol	15.38	5.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400062212	EnsemblPlantsGene:PGSC0003DMG401024210	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	PGSC:PGSC0003DMG401024210	SEG:seg	UniParc:UPI000295F475
UniProt:M1C8P8	MapMan:35.1	:	:	:	:

Description

26S proteasome subunit RPN7 [Source:PGSC_GENE;Acc:PGSC0003DMG401024210]

Coordinates

chr7:+:7049935..7051121

Molecular Weight (calculated)

16179.4 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.364

Length

143 amino acids

Sequence
(BLAST)

001: MDSEEGTQQP QLVLAHKLFL LTHPDVNDLD KVRLREEVLE AVVSNDMAPL FETLVSKGVF SLNLEVLDPM RVKNADELKK LDENCLDSPN MLLHPCRILQ
101: KCTVFEGSDT PYDIFEEFEV PSNIGTQRQG VRIQKPDLSS PKS

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.