Factsheet for Zm00001d017117_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85258	Sorghum	cytosol	98.2	98.2
TraesCS6D01G195300.1	Wheat	golgi, unclear	91.77	90.38
TraesCS6B01G242700.1	Wheat	cytosol	91.52	90.13
TraesCS6A01G212300.1	Wheat	cytosol	92.03	89.05
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	92.03	85.04
GSMUA_Achr8P16370_001	Banana	cytosol	84.32	84.97
GSMUA_Achr6P12080_001	Banana	cytosol	84.06	84.72
KRH03906	Soybean	nucleus	82.26	82.9
VIT_17s0000g10250.t01	Wine grape	cytosol	82.01	82.64
GSMUA_Achr10P...	Banana	cytosol	81.49	82.12
CDX92654	Canola	cytosol	81.49	81.91
Bra013838.1-P	Field mustard	cytosol	80.98	81.4
CDY34315	Canola	cytosol	80.98	81.4
CDY03414	Canola	cytosol	80.98	81.4
Solyc07g009140.2.1	Tomato	nucleus	80.46	81.09
PGSC0003DMT400062214	Potato	cytosol	80.46	81.09
KRH57185	Soybean	cytosol	80.21	80.83
AT4G24820.1	Thale cress	cytosol	80.21	80.62
KRH57190	Soybean	cytosol	79.43	80.47
CDY08956	Canola	extracellular, golgi	56.81	66.17
Zm00001d003257_P002	Maize	plastid	84.32	63.44
CDY34374	Canola	nucleus	17.99	56.45
PGSC0003DMT400062212	Potato	cytosol	14.14	38.46
Zm00001d027359_P001	Maize	cytosol, extracellular	21.08	18.43
Zm00001d048502_P002	Maize	cytosol	5.91	13.45

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100282303	MapMan:19.2.6.2.2.6	ProteinID:AQK72368.1	UniProt:B4FVL1	EMBL:BT041149
ncoils:Coil	EMBL:EU959473	EMBL:EU960419	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145
PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00017B7AEC
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d017117	EnsemblPlants:Zm00001d017117_P001	EnsemblPlants:Zm00001d017117_T001	:	:

Description

26S proteasome non-ATPase regulatory subunit 6 homolog

Coordinates

chr5:+:185970762..185974081

Molecular Weight (calculated)

44273.3 Da

IEP (calculated)

5.532

GRAVY (calculated)

-0.116

Length

389 amino acids

Sequence
(BLAST)

001: MDGGAGEEGK QERHLVLAHK LFLLSHPSVD DLSKVALRAE VLDTVKSDDM ATLFESLVAA GVLEGDAALL AEMRGRIDEE IRKLDEKIAD AEENLGESEV
101: REAHLAKSLY FIRVGEKEKA LEQLKVTEGK TVAVGQKMDL VFHTLQIGFF YMDFDLISKS IDKAKNLFEE GGDWERKNRL KVYEGLYCMA TRNFKKAASL
201: FLDSISTFTT YEIFPYDTFI FYTVLTSVIT LDRVSLKQKV VDAPEILAVI GKVPHLSEFL NSLYNCQYKS FFVAFSGLTE QIKLDRYLQP HFRYYMREVR
301: TVVYSQFLES YKSVTMEAMA TAFGVTVDFI DQELSRFIAA GKLHCKIDKV AGVLETNRPD ERNAFYQATI KQGDFLLNRI QKLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.