Factsheet for GSMUA_Achr10P16630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12080_001	Banana	cytosol	89.38	89.38
GSMUA_Achr8P16370_001	Banana	cytosol	87.56	87.56
VIT_17s0000g10250.t01	Wine grape	cytosol	86.53	86.53
CDX92654	Canola	cytosol	82.64	82.43
KRH03906	Soybean	nucleus	82.38	82.38
Zm00001d017117_P001	Maize	plasma membrane	82.12	81.49
Os04t0485000-01	Rice	plasma membrane	82.12	81.49
OQU85258	Sorghum	cytosol	82.12	81.49
Bra013838.1-P	Field mustard	cytosol	81.61	81.4
CDY03414	Canola	cytosol	81.61	81.4
CDY34315	Canola	cytosol	81.61	81.4
KRH57190	Soybean	cytosol	80.83	81.25
Solyc07g009140.2.1	Tomato	nucleus	81.09	81.09
PGSC0003DMT400062214	Potato	cytosol	81.09	81.09
KRH57185	Soybean	cytosol	81.09	81.09
KXG26586	Sorghum	cytosol	81.35	80.93
AT4G24820.1	Thale cress	cytosol	80.83	80.62
HORVU2Hr1G083860.1	Barley	cytosol	80.83	80.41
TraesCS2A01G320800.1	Wheat	cytosol	80.57	80.15
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.57	80.15
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.57	80.15
TraesCS6D01G195300.1	Wheat	golgi, unclear	80.83	78.99
TraesCS6B01G242700.1	Wheat	cytosol	80.57	78.73
TraesCS6A01G212300.1	Wheat	cytosol	81.09	77.86
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	80.83	74.11
HORVU0Hr1G004970.2	Barley	cytosol	74.87	73.16
CDY08956	Canola	extracellular, golgi	57.51	66.47
CDY34374	Canola	nucleus	19.17	59.68
Zm00001d003257_P002	Maize	plastid	75.91	56.67
PGSC0003DMT400062212	Potato	cytosol	15.03	40.56
GSMUA_Achr11P...	Banana	cytosol	20.21	17.26
GSMUA_Achr8P11930_001	Banana	cytosol	20.21	17.18
GSMUA_Achr11P...	Banana	cytosol	19.69	16.89

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	ncoils:Coil	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr10G16630_001	EnsemblPlants:GSMUA_Achr10P16630_001	EnsemblPlants:GSMUA_Achr10T16630_001	InterPro:IPR000717	UniProt:M0RIT8
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145
PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00029619A9
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 6 [Source:GMGC_GENE;Acc:GSMUA_Achr10G16630_001]

Coordinates

chr10:-:24095591..24100064

Molecular Weight (calculated)

44034.9 Da

IEP (calculated)

5.713

GRAVY (calculated)

-0.141

Length

386 amino acids

Sequence
(BLAST)

001: MEAQDGTQQQ HIALAHKLFL LTHPDVDDIE KVRLRDEVLD AVKTRDMASL YESLAVASVL EMDTAVLDRM RKRIEDELKT LDDKIADAEE NLGESEVREA
101: HLAKSLFFIR IGDKEKALEQ LKTTEEKTVA AGQKMDLVFY TLQLGFFYMD FDLISKSIDK AKNLFEGGGD WERKNRLKVY EGLYCMSTRN FKKAASLFLD
201: SISTFTTDEI FSYDTFIFYT VLTSIISLDR VSLKQKVVDA PEILSVIGKI PHLSEFLNSL YGCHFKSFFS AFSGLTEQIK LDRYLQPHFR FYVREVSTVV
301: YSQFLESYKS VTTEAMAAAF GVSIGFIDQE LSRFIATGKL HCKIDKVAGI LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.