CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03906	Soybean	nucleus	96.09	95.6
KRH57185	Soybean	cytosol	95.31	94.82
VIT_17s0000g10250.t01	Wine grape	cytosol	88.28	87.82
GSMUA_Achr8P16370_001	Banana	cytosol	84.38	83.94
Solyc07g009140.2.1	Tomato	nucleus	84.11	83.68
Bra013838.1-P	Field mustard	cytosol	84.11	83.46
CDY34315	Canola	cytosol	84.11	83.46
PGSC0003DMT400062214	Potato	cytosol	83.85	83.42
CDY03414	Canola	cytosol	83.85	83.2
AT4G24820.1	Thale cress	cytosol	83.59	82.95
CDX92654	Canola	cytosol	83.59	82.95
GSMUA_Achr6P12080_001	Banana	cytosol	82.29	81.87
GSMUA_Achr10P...	Banana	cytosol	81.25	80.83
Os04t0485000-01	Rice	plasma membrane	81.51	80.46
HORVU2Hr1G083860.1	Barley	cytosol	80.99	80.15
TraesCS2A01G320800.1	Wheat	cytosol	80.47	79.64
Zm00001d017117_P001	Maize	plasma membrane	80.47	79.43
KXG26586	Sorghum	cytosol	80.21	79.38
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.21	79.38
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.21	79.38
OQU85258	Sorghum	cytosol	80.21	79.18
TraesCS6B01G242700.1	Wheat	cytosol	78.91	76.71
TraesCS6D01G195300.1	Wheat	golgi, unclear	78.91	76.71
TraesCS6A01G212300.1	Wheat	cytosol	79.17	75.62
HORVU0Hr1G004970.2	Barley	cytosol	75.52	73.42
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	79.95	72.92
CDY08956	Canola	extracellular, golgi	59.38	68.26
KRH04710	Soybean	extracellular	40.1	67.84
CDY34374	Canola	nucleus	20.57	63.71
Zm00001d003257_P002	Maize	plastid	77.34	57.45
KRH48239	Soybean	cytosol	19.01	16.37
KRH65148	Soybean	cytosol	18.75	16.22

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100802610	MapMan:19.2.6.2.2.6	UniProt:A0A0R0JQT2	EMBL:ACUP02002815	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G044900	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717
EnsemblPlants:KRH57190	ProteinID:KRH57190	ProteinID:KRH57190.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602
PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00019AA9BD	InterPro:WH_DNA-bd_sf	:	:

Description

hypothetical protein

Coordinates

chr5:+:4002715..4007337

Molecular Weight (calculated)

44551.8 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.173

Length

384 amino acids

Sequence
(BLAST)

001: MEEEGSQQPQ LVLAEKLFLL RQPVQDIDKV RYKEDVFTHI KENEMVPLYE TLVADSVLDL DRALLDFMRA KIEDELTKLD EKIADAEENL GESEVREAHL
101: AKSLFFIRIM DKEKALEHLK ITETKTVAVG QKMDLVFYTL QLGFFDMDFD LVSKSIDKAK NLFEEGGDWE RKNRLKVYEG LYCMSTRNFK KAAKLFLDSI
201: STFTTCELFP YDTFIFYTVL TSIISLDRVS LKQKVVDAPE ILTVIGKIPY LSEFLNSLYD CQYKSFFSAF AGLTEQIKLD RYLHPHFRYY MREVRTVVYS
301: QFLESYKSVT IEAMAKAFGV TEDFIDVELS RFIAAGKLHC KIDKVEGVLE TNRPDAKNAL YQATIKQGDF LLNRIQKLSR VIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.