CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G083860.1	Barley	cytosol	92.01	92.01
Os04t0485000-01	Rice	plasma membrane	92.01	91.77
TraesCS2D01G341500.1	Wheat	golgi, unclear	91.49	91.49
TraesCS2B01G361900.1	Wheat	golgi, plastid	91.49	91.49
TraesCS2A01G320800.1	Wheat	cytosol	91.24	91.24
OQU85258	Sorghum	cytosol	89.95	89.72
GSMUA_Achr6P12080_001	Banana	cytosol	83.76	84.2
VIT_17s0000g10250.t01	Wine grape	cytosol	82.99	83.42
HORVU0Hr1G004970.2	Barley	cytosol	84.54	83.04
GSMUA_Achr8P16370_001	Banana	cytosol	82.47	82.9
KRH03906	Soybean	nucleus	81.96	82.38
GSMUA_Achr10P...	Banana	cytosol	80.93	81.35
KRH57185	Soybean	cytosol	79.9	80.31
KRH57190	Soybean	cytosol	79.38	80.21
Bra013838.1-P	Field mustard	cytosol	79.64	79.84
CDY34315	Canola	cytosol	79.64	79.84
CDX92654	Canola	cytosol	79.64	79.84
CDY03414	Canola	cytosol	79.12	79.33
PGSC0003DMT400062214	Potato	cytosol	78.87	79.27
Solyc07g009140.2.1	Tomato	nucleus	78.87	79.27
AT4G24820.1	Thale cress	cytosol	78.35	78.55
Zm00001d003257_P002	Maize	plastid	87.89	65.96
CDY08956	Canola	extracellular, golgi	54.64	63.47
CDY34374	Canola	nucleus	18.04	56.45
PGSC0003DMT400062212	Potato	cytosol	12.89	34.97
EER92981	Sorghum	cytosol	21.65	18.96

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	UniProt:A0A1B6PLN8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717	EnsemblPlants:KXG26586
ProteinID:KXG26586	ProteinID:KXG26586.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753
EnsemblPlantsGene:SORBI_3006G126000	SUPFAM:SSF46785	UniParc:UPI000220719E	InterPro:WH_DNA-bd_sf	:	:

Description

hypothetical protein

Coordinates

chr6:+:49129068..49131838

Molecular Weight (calculated)

44100.2 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.089

Length

388 amino acids

Sequence
(BLAST)

001: MDGGGEDGKQ QPHLVLAHKL FLLSRSDVDD LAKVDLRADV LAAVKSDDMA ALYESLAADG VLEMDAALLA EMRARIDEEI RKLDEKIADA EENLGESEVR
101: EAHLAKSLYF IRVGEKEKAL EQLRVTEGKT VAVGQKMDLV FYTLQIGLFY MDFDLISKSI DKAKNLFEEG GDWERKNRLK VYEGLYCMAT RNFKKAASLF
201: LDSISTFTTY ELFTYDTFIF YTVLTSVISL DRVSLKQKVV DAPEILAVIG KVPHLSEFLN SLYNCQYKSF FIAFSGLTEP IKLDRYLQPH FRYYMREVRT
301: VVYSQFLESY KSVTMEAMAA AFGVTVDFID QELSRFIAAG KLHCKIDKVA GVLETNRPDA RNAFYQATIK QGDFLLNRIQ KLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.