Factsheet for TraesCS2B01G361900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G320800.1	Wheat	cytosol	99.23	99.23
HORVU2Hr1G083860.1	Barley	cytosol	98.97	98.97
TraesCS2D01G341500.1	Wheat	golgi, unclear	98.71	98.71
Os04t0485000-01	Rice	plasma membrane	91.75	91.52
KXG26586	Sorghum	cytosol	91.49	91.49
TraesCS6B01G242700.1	Wheat	cytosol	89.43	87.85
HORVU0Hr1G004970.2	Barley	cytosol	87.89	86.33
GSMUA_Achr6P12080_001	Banana	cytosol	82.22	82.64
GSMUA_Achr8P16370_001	Banana	cytosol	82.22	82.64
KRH03906	Soybean	nucleus	81.7	82.12
VIT_17s0000g10250.t01	Wine grape	cytosol	81.7	82.12
CDX92654	Canola	cytosol	80.41	80.62
GSMUA_Achr10P...	Banana	cytosol	80.15	80.57
CDY34315	Canola	cytosol	80.15	80.36
Bra013838.1-P	Field mustard	cytosol	80.15	80.36
KRH57185	Soybean	cytosol	79.9	80.31
KRH57190	Soybean	cytosol	79.38	80.21
PGSC0003DMT400062214	Potato	cytosol	79.64	80.05
Solyc07g009140.2.1	Tomato	nucleus	79.64	80.05
CDY03414	Canola	cytosol	79.64	79.84
AT4G24820.1	Thale cress	cytosol	78.87	79.07
CDY08956	Canola	extracellular, golgi	55.67	64.67
Zm00001d003257_P002	Maize	plastid	83.76	62.86
CDY34374	Canola	nucleus	19.07	59.68
PGSC0003DMT400062212	Potato	cytosol	13.92	37.76
TraesCS4B01G356500.1	Wheat	cytosol	20.62	17.9
TraesCS1B01G196500.2	Wheat	cytosol	19.33	16.7
TraesCS7B01G257700.1	Wheat	plastid	13.92	7.91

Protein Annotations

EnsemblPlants:TraesCS2B01G361900.1	EnsemblPlantsGene:TraesCS2B01G361900	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD6	InterPro:Rpn7/CSN1	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	MapMan:19.2.6.2.2.6	:	:	:

Description

No Description!

Coordinates

chr2B:+:514865761..514868264

Molecular Weight (calculated)

44089.2 Da

IEP (calculated)

5.128

GRAVY (calculated)

-0.123

Length

388 amino acids

Sequence
(BLAST)

001: MDGGGEEGKQ QPQLVLAHKL FLLSQPDVDD LAKVGLRDDV LAAVKSDDMA ALYESLAADG MLEMDAALLA EMRGRIEEET KKFDEKIADA EENLGESEVR
101: EAHLAKSLYF IRVGEKEKAL EQLKVTEGKT VAVGQKMDLV FYTLQIGLFH MDFDLISKSV DKAKILFEEG GDWERKNRLK VYEGLYCMAT RNFKKATSLF
201: LDSVSTFTTY ELFPYDTFIF YTVLTSVITL DRVSLKQKVV DAPEILAVIG KVPHLSEFLN SLYNCQYKSF FVAFSGLTEQ IKLDRYLQPH FRYFMREVRT
301: VVYSQFLESY KSVTMEAMAA SFGVTVDFID QELSRFIAAG KLHCKIDKVA GVLETNRPDA RNAFYQSTIK QGDFLLNRIQ KLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.