Factsheet for Zm00001d003257_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26586	Sorghum	cytosol	65.96	87.89
Os04t0485000-01	Rice	plasma membrane	63.64	84.58
Zm00001d017117_P001	Maize	plasma membrane	63.44	84.32
HORVU2Hr1G083860.1	Barley	cytosol	63.25	84.28
TraesCS2D01G341500.1	Wheat	golgi, unclear	62.86	83.76
TraesCS2B01G361900.1	Wheat	golgi, plastid	62.86	83.76
TraesCS2A01G320800.1	Wheat	cytosol	62.67	83.51
HORVU0Hr1G004970.2	Barley	cytosol	62.09	81.27
VIT_17s0000g10250.t01	Wine grape	cytosol	58.99	79.02
GSMUA_Achr6P12080_001	Banana	cytosol	58.99	79.02
GSMUA_Achr8P16370_001	Banana	cytosol	58.41	78.24
KRH03906	Soybean	nucleus	58.41	78.24
KRH57190	Soybean	cytosol	57.45	77.34
KRH57185	Soybean	cytosol	57.64	77.2
GSMUA_Achr10P...	Banana	cytosol	56.67	75.91
CDX92654	Canola	cytosol	56.29	75.19
Solyc07g009140.2.1	Tomato	nucleus	56.09	75.13
PGSC0003DMT400062214	Potato	cytosol	56.09	75.13
Bra013838.1-P	Field mustard	cytosol	56.09	74.94
CDY34315	Canola	cytosol	56.09	74.94
AT4G24820.1	Thale cress	cytosol	56.09	74.94
CDY03414	Canola	cytosol	55.9	74.68
CDY08956	Canola	extracellular, golgi	38.3	59.28
CDY34374	Canola	nucleus	10.25	42.74
PGSC0003DMT400062212	Potato	cytosol	6.77	24.48
Zm00001d027359_P001	Maize	cytosol, extracellular	15.28	17.75
Zm00001d048502_P002	Maize	cytosol	3.68	11.11

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100282612	MapMan:19.2.6.2.2.6	UniProt:A0A1D6E7Z4	ncoils:Coil	GO:GO:0000502
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0030234
GO:GO:0050790	InterPro:IPR000717	ProteinID:ONM16539.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602
PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000844DAD1	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d003257	EnsemblPlants:Zm00001d003257_P002
EnsemblPlants:Zm00001d003257_T002	SEG:seg	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 6 homolog

Coordinates

chr2:-:38091293..38098388

Molecular Weight (calculated)

57226.8 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.087

Length

517 amino acids

Sequence
(BLAST)

001: MLPVVAMWGQ RCGFDMTATT AIPDAVRTGL ARNRGSSAAR SASGTAAIIS TSLGARARPY LRHAADLSAL RSTSSPRRES SPIAETISAM ARTLASSSER
101: PAGRATPPRP GAGFRRRGCS GTTMAVAAVA IGREGFSERD LGLRVENELS SVGSVFLSAG RPSASVTVQN LPALYSHMAA LYESLAADGV LETDAALLAE
201: MRARIDEEIR KLDEKIADAE ENLGESEVRE AHLAKSLYFI RVGEKEKALE QLKVTEGKTV AVGQKMDLVF YTLQIGLFYM DFDLISKSID KAKNLFEEGG
301: DWERKNRLKV YEGLYCMATR NFKKAASLFL DSISTFTTYE LFTYDTFIFY TVLTSVISLD RVSLKQKVVD APEILAVIGK VPHLSEFLNS LYNCQYKSFF
401: IAFSGLTEPI KLERYLQPHF RYYMREVRTV VYSQFLESYK SVTMEAMAAA FGVTVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAR NAFYQATIKQ
501: GDFLLNRIQK LSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.