Factsheet for Bra013838.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34315	Canola	cytosol	100.0	100.0
AT4G24820.1	Thale cress	cytosol	95.61	95.61
VIT_17s0000g10250.t01	Wine grape	cytosol	84.5	84.72
KRH03906	Soybean	nucleus	84.5	84.72
KRH57190	Soybean	cytosol	83.46	84.11
KRH57185	Soybean	cytosol	83.2	83.42
GSMUA_Achr8P16370_001	Banana	cytosol	82.95	83.16
GSMUA_Achr6P12080_001	Banana	cytosol	82.17	82.38
GSMUA_Achr10P...	Banana	cytosol	81.4	81.61
Os04t0485000-01	Rice	plasma membrane	81.91	81.49
Solyc07g009140.2.1	Tomato	nucleus	81.14	81.35
Zm00001d017117_P001	Maize	plasma membrane	81.4	80.98
OQU85258	Sorghum	cytosol	81.14	80.72
HORVU2Hr1G083860.1	Barley	cytosol	80.62	80.41
TraesCS2A01G320800.1	Wheat	cytosol	80.36	80.15
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.36	80.15
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.36	80.15
KXG26586	Sorghum	cytosol	79.84	79.64
TraesCS6D01G195300.1	Wheat	golgi, unclear	81.14	79.49
TraesCS6B01G242700.1	Wheat	cytosol	80.88	79.24
TraesCS6A01G212300.1	Wheat	cytosol	81.4	78.36
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	81.4	74.82
HORVU0Hr1G004970.2	Barley	cytosol	74.16	72.66
Zm00001d003257_P002	Maize	plastid	74.94	56.09
PGSC0003DMT400062212	Potato	cytosol	14.73	39.86
Bra023038.1-P	Field mustard	nucleus	4.91	18.27
Bra003438.1-P	Field mustard	cytosol	19.64	16.78
Bra007576.1-P	Field mustard	cytosol	18.35	16.28

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	EnsemblPlantsGene:Bra013838	EnsemblPlants:Bra013838.1	EnsemblPlants:Bra013838.1-P	ncoils:Coil
GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0016020	GO:GO:0030234	GO:GO:0050790
InterPro:IPR000717	UniProt:M4DBH8	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI00019AA9C1	InterPro:WH_DNA-bd_sf	:	:	:

Description

AT4G24820 (E=8e-209) | 26S proteasome regulatory subunit, putative (RPN7)

Coordinates

chrA01:-:8015428..8017566

Molecular Weight (calculated)

44169.2 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.128

Length

387 amino acids

Sequence
(BLAST)

001: MDGGAEGSQQ PHLILAHKLF LLTHPDVQDI EKVQLKSDVL DSIKSDGMAP LYETLTASSV LELDQSLLDS MRATNEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFV RISDKEKALE QLKLTEGKTV AVGQKMDLVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAEQI KFDRYLNPHF RFYMREVRTV
301: VYSQFLESYK SVTVDAMANA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.