CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57185	Soybean	cytosol	97.41	97.41
KRH57190	Soybean	cytosol	95.6	96.09
VIT_17s0000g10250.t01	Wine grape	cytosol	90.16	90.16
Solyc07g009140.2.1	Tomato	nucleus	86.27	86.27
PGSC0003DMT400062214	Potato	cytosol	86.01	86.01
GSMUA_Achr8P16370_001	Banana	cytosol	85.49	85.49
Bra013838.1-P	Field mustard	cytosol	84.72	84.5
CDY34315	Canola	cytosol	84.72	84.5
GSMUA_Achr6P12080_001	Banana	cytosol	84.46	84.46
CDX92654	Canola	cytosol	84.46	84.24
CDY03414	Canola	cytosol	84.46	84.24
AT4G24820.1	Thale cress	cytosol	84.2	83.98
Os04t0485000-01	Rice	plasma membrane	83.68	83.03
HORVU2Hr1G083860.1	Barley	cytosol	82.9	82.47
GSMUA_Achr10P...	Banana	cytosol	82.38	82.38
Zm00001d017117_P001	Maize	plasma membrane	82.9	82.26
OQU85258	Sorghum	cytosol	82.64	82.01
KXG26586	Sorghum	cytosol	82.38	81.96
TraesCS2A01G320800.1	Wheat	cytosol	82.38	81.96
TraesCS2B01G361900.1	Wheat	golgi, plastid	82.12	81.7
TraesCS2D01G341500.1	Wheat	golgi, unclear	82.12	81.7
TraesCS6D01G195300.1	Wheat	golgi, unclear	81.61	79.75
TraesCS6B01G242700.1	Wheat	cytosol	81.35	79.49
TraesCS6A01G212300.1	Wheat	cytosol	81.87	78.61
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	82.12	75.3
HORVU0Hr1G004970.2	Barley	cytosol	76.68	74.94
KRH04710	Soybean	extracellular	40.67	69.16
CDY08956	Canola	extracellular, golgi	58.81	67.96
CDY34374	Canola	nucleus	20.47	63.71
Zm00001d003257_P002	Maize	plastid	78.24	58.41
KRH48239	Soybean	cytosol	18.65	16.14
KRH65148	Soybean	cytosol	18.39	15.99

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	UniProt:A0A0R4J5N5	EMBL:ACUP02010367	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G127100
GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717	EnsemblPlants:KRH03906
ProteinID:KRH03906	ProteinID:KRH03906.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI00019AA9BC	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:10156928..10160180

Molecular Weight (calculated)

44579.8 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.168

Length

386 amino acids

Sequence
(BLAST)

001: MEGEEGSQQP QLVLADKLFL LRQPDVQDID KVRYKEDVFT HVKENDMVPL YETLVADSVL DLDRALLDSM RAKIDDELTK LDEKIADAEE NLGESEVREA
101: HLAKSLFFIR IMDKEKALEH LKVTETKTVA VGQKMDLVFY TLQLGFFDMD FDLISKSIDK AKNLFEEGGD WERKNRLKVY EGLYCMSTRN FKKAAKLFLD
201: SISTFTTYEL FPYDTFIFYT VLTSIISLDR VSLKQKVVDA PEILTVIGKI PYLSEFLNSL YDCQYKSFFS AFAGLTEQIK LDRYLHPHFR YYMREVRTVV
301: YSQFLESYKS VTIEAMAKAF GVTVDFIDVE LSRFIAAGKL HCKIDKVAGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.