Factsheet for TraesCS6A01G212300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G242700.1	Wheat	cytosol	97.01	98.73
TraesCS6D01G195300.1	Wheat	golgi, unclear	96.77	98.48
Zm00001d017117_P001	Maize	plasma membrane	89.05	92.03
OQU85258	Sorghum	cytosol	88.81	91.77
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	95.02	90.74
TraesCS2A01G320800.1	Wheat	cytosol	86.57	89.69
GSMUA_Achr6P12080_001	Banana	cytosol	81.09	84.46
GSMUA_Achr8P16370_001	Banana	cytosol	79.85	83.16
VIT_17s0000g10250.t01	Wine grape	cytosol	79.1	82.38
KRH03906	Soybean	nucleus	78.61	81.87
Bra013838.1-P	Field mustard	cytosol	78.36	81.4
CDY34315	Canola	cytosol	78.36	81.4
CDX92654	Canola	cytosol	78.11	81.14
GSMUA_Achr10P...	Banana	cytosol	77.86	81.09
CDY03414	Canola	cytosol	77.86	80.88
PGSC0003DMT400062214	Potato	cytosol	77.11	80.31
Solyc07g009140.2.1	Tomato	nucleus	77.11	80.31
KRH57185	Soybean	cytosol	76.62	79.79
AT4G24820.1	Thale cress	cytosol	76.62	79.59
KRH57190	Soybean	cytosol	75.62	79.17
CDY08956	Canola	extracellular, golgi	54.73	65.87
CDY34374	Canola	nucleus	18.16	58.87
PGSC0003DMT400062212	Potato	cytosol	13.93	39.16
TraesCS5A01G525900.1	Wheat	cytosol, unclear	19.4	17.49
TraesCS1A01G188800.1	Wheat	cytosol	18.41	16.97

Protein Annotations

EnsemblPlants:TraesCS6A01G212300.1	EnsemblPlantsGene:TraesCS6A01G212300	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000717	InterPro:PCI_dom	InterPro:PSMD6	InterPro:Rpn7/CSN1	InterPro:WH_DNA-bd_sf	ncoils:Coil
PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	SEG:seg
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	MapMan:19.2.6.2.2.6	:	:

Description

No Description!

Coordinates

chr6A:-:384966841..384969820

Molecular Weight (calculated)

45171.2 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.159

Length

402 amino acids

Sequence
(BLAST)

001: MDGGGGGGGG GGGGGSTSGD DGKQEKHLVL AHKLFLLSHP DVDDLSKVDL RSDVLSAVKS DDMAPLFESL AAAGVLEPDA VLLSEMRARI DEEIRKLDEK
101: IADAEENLGE SEVREAHLAK SLYFVKVGEK EKALEQLKVT EGKTVAIGQK MDLVFYTLQI GLFYMDFDLI SKSIDKAKKL FEEGGDWERK NRLKVYEGLY
201: CMATRNFKKA TSLFLDSIST FTTYELFPYD TFIFYTVLTS IISLDRVSLK QKVVDAPEIL AVISKVPHLS EFLNSLYNCQ YKSFFVAFSG LTEQIKLDRY
301: LQPHFRYYMR EVRTVVYSQF LESYKSVTME AMASAFGVTV DFIDQELSRF IAAGKLHCKI DKVAGVLETN RPDERNAFYQ STIKQGDFLL NRIQKLSRVI
401: DL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.