Subcellular Localization
min:
: max
Winner_takes_all: unclear, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 98.43 | 98.43 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 98.43 | 98.21 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 22.87 | 91.07 |
| EER92981 | Sorghum | cytosol | 84.08 | 84.65 |
| Os03t0116500-01 | Rice | cytosol | 83.41 | 84.35 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 82.74 | 82.92 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 93.95 | 76.18 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 72.65 | 74.31 |
| HORVU6Hr1G027500.11 | Barley | plastid | 45.74 | 71.83 |
| Zm00001d048502_P002 | Maize | cytosol | 27.13 | 70.76 |
| KRH65148 | Soybean | cytosol | 69.96 | 70.27 |
| GSMUA_Achr11P... | Banana | cytosol | 69.96 | 69.33 |
| KRH48239 | Soybean | cytosol | 69.28 | 69.28 |
| PGSC0003DMT400071374 | Potato | cytosol | 68.16 | 69.09 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 68.16 | 68.93 |
| Solyc01g091650.2.1 | Tomato | cytosol | 67.94 | 68.86 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 69.96 | 68.72 |
| GSMUA_Achr11P... | Banana | cytosol | 69.51 | 68.58 |
| AT3G61140.1 | Thale cress | cytosol | 65.7 | 66.44 |
| CDY52333 | Canola | cytosol | 65.7 | 65.99 |
| Bra007576.1-P | Field mustard | cytosol | 64.13 | 65.6 |
| CDY65304 | Canola | cytosol | 65.02 | 65.46 |
| CDY45683 | Canola | cytosol | 65.92 | 64.9 |
| CDX67853 | Canola | cytosol | 65.7 | 64.68 |
| Bra003438.1-P | Field mustard | cytosol | 65.7 | 64.68 |
| TraesCS2A01G320800.1 | Wheat | cytosol | 17.26 | 19.85 |
| TraesCS6A01G212300.1 | Wheat | cytosol | 17.49 | 19.4 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5A01G525900 | EnsemblPlants:TraesCS5A01G525900.1 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:685988595..685994364
Molecular Weight (calculated)
50252.2 Da
IEP (calculated)
7.624
GRAVY (calculated)
-0.287
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDCEVSAA AAAAVTNGLG GEGQPSAAPV SADQLDVEAY AAQYSGRTRV ARLLFIAERC GVEAIQLEAL RMAHDEARAR EDTVLYLDAV LKINGRLGPR
101: YRHDQAWVDS VNRRAEQRKE KLETELNGYR TNLIKESIRM GYNDIGDFFY AHGHLSEAFK SYIRTRDYCT TSKHIVQMCM HVILVSIELG QFAHVTNYVS
201: KAEQTPDTLD AVIVAKLRAA AGLANLETKK YKLAARKFLE TGPELGSNYS EVIAPQDVAV CGALCALASF DRSELKSKVI DNINFRNFLE LVPEVRELVN
301: DFYASRYGSC LEHLEKLKPN LLLDIHLREH LGTLYNDIRH KAIIQYTLPF ISVDLNTMAS AFKSSVSMLE KELAALITEN KIQARIDSHN KILYARHADQ
401: RNATFQRALQ TGNEFERDIK AMLLRANLIK HDFNQKNWPG QRKMNL
101: YRHDQAWVDS VNRRAEQRKE KLETELNGYR TNLIKESIRM GYNDIGDFFY AHGHLSEAFK SYIRTRDYCT TSKHIVQMCM HVILVSIELG QFAHVTNYVS
201: KAEQTPDTLD AVIVAKLRAA AGLANLETKK YKLAARKFLE TGPELGSNYS EVIAPQDVAV CGALCALASF DRSELKSKVI DNINFRNFLE LVPEVRELVN
301: DFYASRYGSC LEHLEKLKPN LLLDIHLREH LGTLYNDIRH KAIIQYTLPF ISVDLNTMAS AFKSSVSMLE KELAALITEN KIQARIDSHN KILYARHADQ
401: RNATFQRALQ TGNEFERDIK AMLLRANLIK HDFNQKNWPG QRKMNL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.