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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G188800.1
TraesCS1B01G196500.2
TraesCS1D01G187600.1
TraesCS4A01G041600.1
TraesCS4B01G262600.1
TraesCS4B01G356500.1
TraesCS4D01G262700.1
TraesCS4D01G350200.1
TraesCS5A01G525900.1
TraesCS5D01G238500.1
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1
TraesCS7A01G315600.1
TraesCS7B01G216600.2
TraesCS7B01G257700.1
TraesCS7D01G312600.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26990.1 TraesCS6A01G306600.1 AT1G26830.1 12615944
AT2G26990.1 TraesCS6B01G335200.1 AT1G26830.1 12615944
AT2G26990.1 TraesCS6D01G285800.1 AT1G26830.1 12615944
AT2G26990.1 TraesCS1A01G188800.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS1B01G196500.2 AT3G61140.1 11854419
AT2G26990.1 TraesCS1D01G187600.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS4B01G356500.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS4D01G350200.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS5A01G525900.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS5D01G238500.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS7B01G257700.1 AT3G61140.1 11854419
AT2G26990.1 TraesCS1A01G188800.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS1B01G196500.2 AT3G61140.1 12615944
AT2G26990.1 TraesCS1D01G187600.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS4B01G356500.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS4D01G350200.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS5A01G525900.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS5D01G238500.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS7B01G257700.1 AT3G61140.1 12615944
AT2G26990.1 TraesCS7A01G315600.1 AT5G14250.1 12615944
AT2G26990.1 TraesCS7B01G216600.2 AT5G14250.1 12615944
AT2G26990.1 TraesCS7D01G312600.2 AT5G14250.1 12615944
AT2G26990.1 TraesCS4A01G041600.1 AT5G42970.1 12615944
AT2G26990.1 TraesCS4B01G262600.1 AT5G42970.1 12615944
AT2G26990.1 TraesCS4D01G262700.1 AT5G42970.1 12615944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G191800.1 Wheat golgi, unclear 100.0 100.0
HORVU3Hr1G039980.8 Barley nucleus 100.0 100.0
TraesCS3B01G219800.1 Wheat cytosol 99.77 99.77
Os01t0279200-02 Rice plasma membrane 97.72 97.72
EES02774 Sorghum cytosol 95.9 95.9
Zm00001d040462_P001 Maize cytosol, nucleus, peroxisome 95.22 92.89
VIT_08s0040g00430.t01 Wine grape cytosol 91.8 91.59
Solyc11g062430.1.1 Tomato cytosol 91.12 91.12
KRH64921 Soybean nucleus 90.89 90.89
Solyc01g008840.2.1 Tomato cytosol 90.66 90.66
PGSC0003DMT400082384 Potato cytosol 90.43 90.43
Zm00001d008233_P001 Maize cytosol, nucleus, peroxisome 95.22 90.09
KRG94272 Soybean nucleus 88.84 88.84
KRH57710 Soybean nucleus 88.84 88.84
Solyc10g081150.1.1 Tomato nucleus 88.61 88.61
PGSC0003DMT400072227 Potato nucleus 88.61 88.61
KRG94968 Soybean cytosol 89.98 87.78
CDY38538 Canola cytosol 83.83 83.83
Bra000529.1-P Field mustard cytosol 83.14 83.14
CDX71478 Canola cytosol 83.14 83.14
CDX83249 Canola cytosol 82.92 83.11
PGSC0003DMT400058484 Potato cytosol 90.43 83.05
AT2G26990.1 Thale cress cytosol 82.69 82.69
CDY04472 Canola cytosol 82.69 82.69
GSMUA_Achr6P08520_001 Banana cytosol 35.31 81.15
Bra012038.1-P Field mustard nucleus 82.0 42.15
TraesCS2D01G310600.1 Wheat cytosol, nucleus, plastid 19.36 20.14
TraesCS4D01G349100.1 Wheat cytosol, nucleus, plastid 19.36 19.95
TraesCS2D01G265800.1 Wheat cytosol, nucleus, plastid 18.91 19.53
Protein Annotations
EnsemblPlants:TraesCS3D01G194400.1EnsemblPlantsGene:TraesCS3D01G194400Gene3D:1.25.40.570InterPro:IPR000717InterPro:PCI_domInterPro:WH_DNA-bd_sf
PANTHER:PTHR10678PANTHER:PTHR10678:SF3PFAM:PF01399PFscan:PS50250SMART:SM00088SMART:SM00753
SUPFAM:SSF46785MapMan:19.2.3.3.1.2::::
Description
No Description!
Coordinates
chr3D:+:185484111..185491078
Molecular Weight (calculated)
51295.6 Da
IEP (calculated)
5.873
GRAVY (calculated)
-0.635
Length
439 amino acids
Sequence
(BLAST)
001: MGSDADMEDY GFEYSDDEPE EQDVDIENQY YNSKGMVETD PEGALAGFDA VVRMEPEKAE WGFKALKQTV KLYYKLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQH FNLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCQKEDG SDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYQRALSI KSAIPHPRIM GIIRECGGKM HMAERQWADA ATDFFEAFKN YDEAGNPRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQKNDIM EFEKILKSNR RTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SQELNVPEKD VEQLLVSLIL DNRVQGHIDQ
401: VNKLLECGDR SKGMRKYQAI DKWNTQLKSI YQTVSNRVG
Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)
001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
Arabidopsis Description
CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.