Factsheet for TraesCS3B01G219800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G188800.1
TraesCS1B01G196500.2
TraesCS1D01G187600.1
TraesCS4A01G041600.1
TraesCS4B01G262600.1
TraesCS4B01G356500.1
TraesCS4D01G262700.1
TraesCS4D01G350200.1
TraesCS5A01G525900.1
TraesCS5D01G238500.1
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1
TraesCS7A01G315600.1
TraesCS7B01G216600.2
TraesCS7B01G257700.1
TraesCS7D01G312600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	TraesCS6A01G306600.1	AT1G26830.1	12615944
AT2G26990.1	TraesCS6B01G335200.1	AT1G26830.1	12615944
AT2G26990.1	TraesCS6D01G285800.1	AT1G26830.1	12615944
AT2G26990.1	TraesCS1A01G188800.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS1B01G196500.2	AT3G61140.1	11854419
AT2G26990.1	TraesCS1D01G187600.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS4B01G356500.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS4D01G350200.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS5A01G525900.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS5D01G238500.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS7B01G257700.1	AT3G61140.1	11854419
AT2G26990.1	TraesCS1A01G188800.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS1B01G196500.2	AT3G61140.1	12615944
AT2G26990.1	TraesCS1D01G187600.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS4B01G356500.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS4D01G350200.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS5A01G525900.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS5D01G238500.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS7B01G257700.1	AT3G61140.1	12615944
AT2G26990.1	TraesCS7A01G315600.1	AT5G14250.1	12615944
AT2G26990.1	TraesCS7B01G216600.2	AT5G14250.1	12615944
AT2G26990.1	TraesCS7D01G312600.2	AT5G14250.1	12615944
AT2G26990.1	TraesCS4A01G041600.1	AT5G42970.1	12615944
AT2G26990.1	TraesCS4B01G262600.1	AT5G42970.1	12615944
AT2G26990.1	TraesCS4D01G262700.1	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G194400.1	Wheat	nucleus	99.77	99.77
TraesCS3A01G191800.1	Wheat	golgi, unclear	99.77	99.77
HORVU3Hr1G039980.8	Barley	nucleus	99.77	99.77
Os01t0279200-02	Rice	plasma membrane	97.49	97.49
EES02774	Sorghum	cytosol	95.67	95.67
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	94.99	92.67
VIT_08s0040g00430.t01	Wine grape	cytosol	91.57	91.36
Solyc11g062430.1.1	Tomato	cytosol	90.89	90.89
KRH64921	Soybean	nucleus	90.66	90.66
Solyc01g008840.2.1	Tomato	cytosol	90.43	90.43
PGSC0003DMT400082384	Potato	cytosol	90.2	90.2
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	94.99	89.87
KRG94272	Soybean	nucleus	88.61	88.61
KRH57710	Soybean	nucleus	88.61	88.61
Solyc10g081150.1.1	Tomato	nucleus	88.38	88.38
PGSC0003DMT400072227	Potato	nucleus	88.38	88.38
KRG94968	Soybean	cytosol	89.75	87.56
CDY38538	Canola	cytosol	83.6	83.6
Bra000529.1-P	Field mustard	cytosol	82.92	82.92
CDX71478	Canola	cytosol	82.92	82.92
CDX83249	Canola	cytosol	82.69	82.88
PGSC0003DMT400058484	Potato	cytosol	90.2	82.85
AT2G26990.1	Thale cress	cytosol	82.46	82.46
CDY04472	Canola	cytosol	82.46	82.46
GSMUA_Achr6P08520_001	Banana	cytosol	35.31	81.15
Bra012038.1-P	Field mustard	nucleus	81.78	42.04
TraesCS2B01G329100.1	Wheat	golgi, unclear	19.36	19.95
TraesCS2B01G285600.1	Wheat	golgi	18.91	19.53
TraesCS4B01G355700.1	Wheat	nucleus	18.91	18.82

Protein Annotations

EnsemblPlants:TraesCS3B01G219800.1	EnsemblPlantsGene:TraesCS3B01G219800	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	PFAM:PF01399	PFscan:PS50250	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	MapMan:19.2.3.3.1.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:265847526..265855135

Molecular Weight (calculated)

51281.6 Da

IEP (calculated)

5.873

GRAVY (calculated)

-0.635

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDDEPE EQDVDIENQY YNSKGMVETD PEGALAGFDA VVRMEPEKAE WGFKALKQTV KLYYKLGKYK EMMDAYREML TYVKSAVTRN
101: YSEKCINNIM DFVSGSASQH FNLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCQKEDG SDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYQRALSI KSAIPHPRIM GIIRECGGKM HMAERQWADA ATDFFEAFKN YDEAGNPRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQKNDIM EFEKILKSNR RTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SQELNVPEKD VEQLLVSLIL DNRVQGHIDQ
401: VNKLLECGDR SKGMRKYQAI DKWNTQLKSI YQTVSNRVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.