CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67853
CDX70553
CDX71533
CDX78568
CDX78656
CDX85608
CDX91076
CDY02426
CDY16196
CDY22374
CDY26433
CDY45004
CDY45683
CDY46437
CDY50732
CDY52333
CDY61016
CDY65304

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	CDY16196	AT1G26830.1	12615944
AT2G26990.1	CDY45004	AT1G26830.1	12615944
AT2G26990.1	CDY46437	AT1G26830.1	12615944
AT2G26990.1	CDY50732	AT1G26830.1	12615944
AT2G26990.1	CDX67853	AT3G61140.1	11854419
AT2G26990.1	CDY45683	AT3G61140.1	11854419
AT2G26990.1	CDY52333	AT3G61140.1	11854419
AT2G26990.1	CDY65304	AT3G61140.1	11854419
AT2G26990.1	CDX67853	AT3G61140.1	12615944
AT2G26990.1	CDY45683	AT3G61140.1	12615944
AT2G26990.1	CDY52333	AT3G61140.1	12615944
AT2G26990.1	CDY65304	AT3G61140.1	12615944
AT2G26990.1	CDX70553	AT5G14250.1	12615944
AT2G26990.1	CDX78568	AT5G14250.1	12615944
AT2G26990.1	CDX78656	AT5G14250.1	12615944
AT2G26990.1	CDX85608	AT5G14250.1	12615944
AT2G26990.1	CDX91076	AT5G14250.1	12615944
AT2G26990.1	CDY26433	AT5G14250.1	12615944
AT2G26990.1	CDX71533	AT5G42970.1	12615944
AT2G26990.1	CDY02426	AT5G42970.1	12615944
AT2G26990.1	CDY22374	AT5G42970.1	12615944
AT2G26990.1	CDY61016	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04472	Canola	cytosol	99.09	99.09
CDY38538	Canola	cytosol	95.67	95.67
CDX83249	Canola	cytosol	94.99	95.21
AT2G26990.1	Thale cress	cytosol	93.85	93.85
GSMUA_Achr6P23660_001	Banana	cytosol	85.19	86.37
Solyc11g062430.1.1	Tomato	cytosol	85.65	85.65
KRH64921	Soybean	nucleus	85.42	85.42
VIT_08s0040g00430.t01	Wine grape	cytosol	85.42	85.23
PGSC0003DMT400082384	Potato	cytosol	84.51	84.51
KRH57710	Soybean	nucleus	84.05	84.05
Solyc01g008840.2.1	Tomato	cytosol	83.37	83.37
KRG94272	Soybean	nucleus	83.37	83.37
TraesCS3D01G194400.1	Wheat	nucleus	83.14	83.14
TraesCS3A01G191800.1	Wheat	golgi, unclear	83.14	83.14
Os01t0279200-02	Rice	plasma membrane	83.14	83.14
HORVU3Hr1G039980.8	Barley	nucleus	83.14	83.14
KRG94968	Soybean	cytosol	85.19	83.11
TraesCS3B01G219800.1	Wheat	cytosol	82.92	82.92
EES02774	Sorghum	cytosol	82.69	82.69
PGSC0003DMT400072227	Potato	nucleus	82.0	82.0
Solyc10g081150.1.1	Tomato	nucleus	82.0	82.0
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	82.46	80.44
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	82.23	77.8
PGSC0003DMT400058484	Potato	cytosol	83.14	76.36
CDY15648	Canola	cytosol, mitochondrion	12.53	18.9
CDX99790	Canola	cytosol, nucleus, plastid	17.54	18.38
CDY43320	Canola	extracellular	17.31	18.14
CDX90170	Canola	cytosol, nucleus, plastid	17.31	18.14
CDY50790	Canola	cytosol	17.08	17.9
CDX94649	Canola	endoplasmic reticulum	14.58	16.24
CDY04471	Canola	nucleus	9.79	11.68

Protein Annotations

EnsemblPlants:CDX71478	EnsemblPlantsGene:GSBRNA2T00148352001	Gene3D:1.25.40.570	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	PFAM:PF01399	PFscan:PS50250	ProteinID:CDX71478	ProteinID:CDX71478.1
SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EDBCA8	MapMan:19.2.3.3.1.2

Description

BnaC04g17130D

Coordinates

chrLK031793:+:1291678..1294097

Molecular Weight (calculated)

51121.3 Da

IEP (calculated)

5.484

GRAVY (calculated)

-0.594

Length

439 amino acids

Sequence
(BLAST)

001: MASDADMEDY GFEYSDEEPE EQDVDIENQY YNSKGNIETE PEEALSGFAE VVRMEPDKAE WGFKALKQTV KIYYRLGKYR EMMDAYREML TYIKSAVTRN
101: YSEKCINSIM DFVSGSAGQN TGLLQEFYQT TLTALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYQKALAI KSAIPHPRIM GIIRECGGKM HMAERQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL VAAYQRNEII EFEKILKNNR KTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPEKD VTELLVSLIL DSRIDGHIDE
401: INRYLLRGDS ANGRKLHKAV DKWNTQLKSL SISITNRVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.