Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50790 | Canola | cytosol | 98.33 | 98.33 |
| CDX90170 | Canola | cytosol, nucleus, plastid | 98.09 | 98.09 |
| CDY43320 | Canola | extracellular | 97.85 | 97.85 |
| AT1G29150.1 | Thale cress | cytosol, nucleus, plastid | 97.37 | 97.37 |
| GSMUA_Achr9P29490_001 | Banana | cytosol | 84.01 | 89.11 |
| KRH61975 | Soybean | cytosol, nucleus, plastid | 87.35 | 86.73 |
| KRH52636 | Soybean | endoplasmic reticulum | 86.87 | 86.26 |
| KRH04812 | Soybean | nucleus | 85.2 | 84.8 |
| KRH16194 | Soybean | cytosol | 81.62 | 83.62 |
| CDY15648 | Canola | cytosol, mitochondrion | 57.76 | 83.16 |
| Os04t0444600-01 | Rice | plasma membrane | 83.77 | 82.59 |
| TraesCS2D01G310600.1 | Wheat | cytosol, nucleus, plastid | 83.05 | 82.46 |
| TraesCS2B01G329100.1 | Wheat | golgi, unclear | 83.53 | 82.16 |
| TraesCS5A01G524900.1 | Wheat | cytosol, nucleus, plastid | 83.29 | 81.92 |
| EES17355 | Sorghum | plastid | 83.05 | 81.69 |
| TraesCS4D01G349100.1 | Wheat | cytosol, nucleus, plastid | 83.05 | 81.69 |
| Zm00001d041456_P001 | Maize | extracellular | 82.58 | 81.22 |
| GSMUA_Achr10P... | Banana | cytosol | 81.38 | 80.81 |
| OQU81648 | Sorghum | nucleus | 82.1 | 80.75 |
| HORVU2Hr1G064590.1 | Barley | cytosol, nucleus, plastid | 81.86 | 80.71 |
| TraesCS2B01G285600.1 | Wheat | golgi | 81.86 | 80.71 |
| TraesCS2D01G265800.1 | Wheat | cytosol, nucleus, plastid | 81.86 | 80.71 |
| Solyc05g013030.1.1 | Tomato | plastid | 81.38 | 80.61 |
| TraesCS2A01G257000.1 | Wheat | cytosol, nucleus, plastid | 81.62 | 80.47 |
| PGSC0003DMT400072856 | Potato | plastid | 81.15 | 80.38 |
| Zm00001d003566_P001 | Maize | plasma membrane | 82.34 | 79.86 |
| Zm00001d003567_P001 | Maize | cytosol, nucleus, plastid | 82.1 | 79.63 |
| TraesCS4B01G355700.1 | Wheat | nucleus | 81.38 | 77.32 |
| CDX94649 | Canola | endoplasmic reticulum | 72.55 | 77.16 |
| HORVU4Hr1G086010.2 | Barley | plastid | 82.82 | 75.93 |
| VIT_12s0034g00940.t01 | Wine grape | extracellular | 19.81 | 72.17 |
| HORVU2Hr1G077540.2 | Barley | cytosol | 83.05 | 71.02 |
| VIT_15s0048g00130.t01 | Wine grape | cytosol | 5.25 | 57.89 |
| Os03t0576400-00 | Rice | nucleus | 14.32 | 54.55 |
| CDX83249 | Canola | cytosol | 18.62 | 17.81 |
| CDX71478 | Canola | cytosol | 18.38 | 17.54 |
| CDY04472 | Canola | cytosol | 18.38 | 17.54 |
| CDY38538 | Canola | cytosol | 18.38 | 17.54 |
| CDY04471 | Canola | nucleus | 10.98 | 12.5 |
Protein Annotations
| EnsemblPlants:CDX99790 | EnsemblPlantsGene:GSBRNA2T00108467001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:WH_DNA-bd_sf |
| ncoils:Coil | PANTHER:PTHR10678 | PANTHER:PTHR10678:SF14 | PFAM:PF01399 | PFscan:PS50250 | ProteinID:CDX99790 |
| ProteinID:CDX99790.1 | SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EC4EF3 |
| MapMan:19.2.6.2.2.5 | : | : | : | : | : |
Description
BnaC05g22120D
Coordinates
chrLK031914:+:22165..24133
Molecular Weight (calculated)
46695.7 Da
IEP (calculated)
6.202
GRAVY (calculated)
-0.032
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSYPATTET ISLALEANSS EAIQILYQVL EDPSSSPEAL RVKEQAITNL CDRLTEEKRG EDLRTLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VQWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD SRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPVDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLDTI
401: ANMEKVVDSL YVRSAKIMA
101: DLQITLCKEM VQWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD SRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPVDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLDTI
401: ANMEKVVDSL YVRSAKIMA
001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS
Arabidopsis Description
RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.