CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61975	Soybean	cytosol, nucleus, plastid	98.82	98.82
KRH04812	Soybean	nucleus	90.76	90.97
GSMUA_Achr9P29490_001	Banana	cytosol	84.6	90.38
KRH16194	Soybean	cytosol	86.97	89.73
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	86.49	87.11
CDX90170	Canola	cytosol, nucleus, plastid	86.49	87.11
CDY43320	Canola	extracellular	86.49	87.11
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	86.26	86.87
CDX99790	Canola	cytosol, nucleus, plastid	86.26	86.87
Os04t0444600-01	Rice	plasma membrane	86.97	86.35
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	85.31	85.92
CDY50790	Canola	cytosol	85.07	85.68
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	85.55	85.55
EES17355	Sorghum	plastid	86.26	85.45
Zm00001d041456_P001	Maize	extracellular	86.02	85.21
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	86.02	85.21
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	85.78	84.98
OQU81648	Sorghum	nucleus	85.78	84.98
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	85.55	84.94
TraesCS2B01G285600.1	Wheat	golgi	85.55	84.94
TraesCS2B01G329100.1	Wheat	golgi, unclear	85.55	84.74
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	85.31	84.71
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	85.31	84.71
Zm00001d003566_P001	Maize	plasma membrane	86.49	84.49
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	86.26	84.26
GSMUA_Achr10P...	Banana	cytosol	84.12	84.12
Solyc05g013030.1.1	Tomato	plastid	84.12	83.92
PGSC0003DMT400072856	Potato	plastid	83.89	83.69
TraesCS4B01G355700.1	Wheat	nucleus	84.12	80.5
HORVU4Hr1G086010.2	Barley	plastid	85.55	78.99
CDY15648	Canola	cytosol, mitochondrion	52.61	76.29
HORVU2Hr1G077540.2	Barley	cytosol	86.02	74.08
VIT_12s0034g00940.t01	Wine grape	extracellular	19.19	70.43
CDX94649	Canola	endoplasmic reticulum	64.22	68.78
Os03t0576400-00	Rice	nucleus	16.59	63.64
VIT_15s0048g00130.t01	Wine grape	cytosol	4.5	50.0
KRH64921	Soybean	nucleus	19.91	19.13
KRH57710	Soybean	nucleus	19.43	18.68
KRG94968	Soybean	cytosol	19.91	18.67
KRG94272	Soybean	nucleus	19.19	18.45

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100780845	MapMan:19.2.6.2.2.5	EMBL:ACUP02003425	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G079600
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248
UniProt:I1K970	InterPro:IPR000717	InterPro:IPR011990	EnsemblPlants:KRH52636	ProteinID:KRH52636	ProteinID:KRH52636.1
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678	PANTHER:PTHR10678:SF14	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A5DA	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:6114224..6118336

Molecular Weight (calculated)

46905.9 Da

IEP (calculated)

5.745

GRAVY (calculated)

-0.054

Length

422 amino acids

Sequence
(BLAST)

001: MSSPYLPATT DSLALATEAK DPSEAISILY RVLDDPSSSP DALRMKEQAI TNLTKLLTDE NRGEDLRSLL TQLRPFFSLI PKAKTAKIVR GIIDSVAKIP
101: GTSDLQIALC KEMVLWTRAE KRTFLRQRVE ARLAALLMES KEYSEALTLL SGLVKEVRRL DDKLLLVDID LLESKLHFSL RNLPKAKAAL TAARTAANAI
201: YVPPAQQGAI DLQSGILHAE EKDYKTAYSY FFEAFESFNA LDDPKAVFSL KYMLLCKIMV NQADDVGGII SSKAGLQYLG PDLDAMKAVA DAHSKRSLNL
301: FEIALRDYKA QLEEDPIVHR HLSSLYDTLM EQNLCRLIEP FSRVEIAHIA ELIELPTDHV ERKLSQMILD KKFAGTLDQG AGCLVIFDDP KTDAIYPATL
401: ETISNVGKVV DSLYVRSAKI MA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.