Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15648 | Canola | cytosol, mitochondrion | 61.93 | 83.85 |
| CDX99790 | Canola | cytosol, nucleus, plastid | 77.16 | 72.55 |
| CDY50790 | Canola | cytosol | 77.16 | 72.55 |
| AT1G29150.1 | Thale cress | cytosol, nucleus, plastid | 76.65 | 72.08 |
| CDX90170 | Canola | cytosol, nucleus, plastid | 76.4 | 71.84 |
| CDY43320 | Canola | extracellular | 76.14 | 71.6 |
| GSMUA_Achr9P29490_001 | Banana | cytosol | 65.48 | 65.32 |
| KRH61975 | Soybean | cytosol, nucleus, plastid | 69.29 | 64.69 |
| KRH52636 | Soybean | endoplasmic reticulum | 68.78 | 64.22 |
| KRH04812 | Soybean | nucleus | 66.5 | 62.23 |
| Os04t0444600-01 | Rice | plasma membrane | 66.5 | 61.65 |
| Solyc05g013030.1.1 | Tomato | plastid | 65.99 | 61.47 |
| EES17355 | Sorghum | plastid | 66.24 | 61.27 |
| PGSC0003DMT400072856 | Potato | plastid | 65.74 | 61.23 |
| TraesCS2B01G285600.1 | Wheat | golgi | 65.74 | 60.94 |
| KRH16194 | Soybean | cytosol | 63.2 | 60.88 |
| Zm00001d041456_P001 | Maize | extracellular | 65.74 | 60.8 |
| TraesCS2A01G257000.1 | Wheat | cytosol, nucleus, plastid | 65.23 | 60.47 |
| TraesCS2D01G265800.1 | Wheat | cytosol, nucleus, plastid | 65.23 | 60.47 |
| OQU81648 | Sorghum | nucleus | 65.23 | 60.33 |
| TraesCS5A01G524900.1 | Wheat | cytosol, nucleus, plastid | 65.23 | 60.33 |
| HORVU2Hr1G064590.1 | Barley | cytosol, nucleus, plastid | 64.97 | 60.24 |
| TraesCS2D01G310600.1 | Wheat | cytosol, nucleus, plastid | 64.47 | 60.19 |
| TraesCS2B01G329100.1 | Wheat | golgi, unclear | 64.97 | 60.09 |
| Zm00001d003566_P001 | Maize | plasma membrane | 65.74 | 59.95 |
| TraesCS4D01G349100.1 | Wheat | cytosol, nucleus, plastid | 64.72 | 59.86 |
| Zm00001d003567_P001 | Maize | cytosol, nucleus, plastid | 65.48 | 59.72 |
| GSMUA_Achr10P... | Banana | cytosol | 62.94 | 58.77 |
| TraesCS4B01G355700.1 | Wheat | nucleus | 63.71 | 56.92 |
| VIT_12s0034g00940.t01 | Wine grape | extracellular | 16.5 | 56.52 |
| HORVU4Hr1G086010.2 | Barley | plastid | 64.97 | 56.02 |
| HORVU2Hr1G077540.2 | Barley | cytosol | 64.72 | 52.04 |
| VIT_15s0048g00130.t01 | Wine grape | cytosol | 4.82 | 50.0 |
| Os03t0576400-00 | Rice | nucleus | 10.41 | 37.27 |
| CDX83249 | Canola | cytosol | 16.5 | 14.84 |
| CDY04472 | Canola | cytosol | 16.24 | 14.58 |
| CDY38538 | Canola | cytosol | 16.24 | 14.58 |
| CDX71478 | Canola | cytosol | 16.24 | 14.58 |
| CDY04471 | Canola | nucleus | 10.66 | 11.41 |
Protein Annotations
| EnsemblPlants:CDX94649 | EnsemblPlantsGene:GSBRNA2T00157973001 | Gene3D:1.25.40.570 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:WH_DNA-bd_sf |
| ncoils:Coil | PANTHER:PTHR10678 | PANTHER:PTHR10678:SF14 | PFAM:PF01399 | ProteinID:CDX94649 | ProteinID:CDX94649.1 |
| SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EC84FF | MapMan:19.2.6.2.2.5 |
Description
BnaC07g10090D
Coordinates
chrLK031883:+:715451..716751
Molecular Weight (calculated)
44790.7 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.221
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MALTLQGFEF LHTTAMVSFP ATTETISLAL EANSSEAIHI LDQVLEDPSS SPEDLRIKEQ AITNLCERLT KEKRGQDREN RQRDHRCHGK DTLNNWSPDH
101: SLQRDGEWTR AEKRTFLRQR VEARLAALLM ENKEYVEALA LLSTLVKEVS RLDDQVLLVE IDLLESKLHF SLRNLPKVKA ALTTARTAAN AIYYPPAQQR
201: TINFQSGILN AEEKYCKTGY NYFFEGFESF NALGNSRAVL SFKYMLFCKI MVSQADDVVG IISLMVGLQS LKLFENALYD YKAEQEDDPV IHRHLSSLYD
301: TLLEQNLCRL IEPFSRVEIA HIAELIELPI DHVEKLSQMI LDKKFAGTLD QGAGYLIIFE DPKVDAIYSA TLDTTANMEK VVDSLYVRSA KIMA
101: SLQRDGEWTR AEKRTFLRQR VEARLAALLM ENKEYVEALA LLSTLVKEVS RLDDQVLLVE IDLLESKLHF SLRNLPKVKA ALTTARTAAN AIYYPPAQQR
201: TINFQSGILN AEEKYCKTGY NYFFEGFESF NALGNSRAVL SFKYMLFCKI MVSQADDVVG IISLMVGLQS LKLFENALYD YKAEQEDDPV IHRHLSSLYD
301: TLLEQNLCRL IEPFSRVEIA HIAELIELPI DHVEKLSQMI LDKKFAGTLD QGAGYLIIFE DPKVDAIYSA TLDTTANMEK VVDSLYVRSA KIMA
001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS
Arabidopsis Description
RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.