Factsheet for Solyc05g013030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072856	Potato	plastid	99.76	99.76
VIT_01s0182g00070.t01	Wine grape	plastid	85.82	86.02
GSMUA_Achr9P29490_001	Banana	cytosol	79.2	84.81
KRH61975	Soybean	cytosol, nucleus, plastid	84.16	84.36
KRH52636	Soybean	endoplasmic reticulum	83.92	84.12
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	81.32	82.1
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	81.09	81.86
CDY43320	Canola	extracellular	81.09	81.86
CDX90170	Canola	cytosol, nucleus, plastid	81.09	81.86
Os04t0444600-01	Rice	plasma membrane	81.8	81.41
CDX99790	Canola	cytosol, nucleus, plastid	80.61	81.38
KRH04812	Soybean	nucleus	80.85	81.24
GSMUA_Achr10P...	Banana	cytosol	80.38	80.57
KRH16194	Soybean	cytosol	77.78	80.44
VIT_14s0030g01670.t01	Wine grape	plastid	87.0	80.35
EES17355	Sorghum	plastid	80.85	80.28
OQU81648	Sorghum	nucleus	80.61	80.05
Zm00001d041456_P001	Maize	extracellular	80.61	80.05
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	79.2	79.95
CDY50790	Canola	cytosol	79.2	79.95
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	79.67	79.86
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	80.14	79.58
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	80.14	79.58
Zm00001d003566_P001	Maize	plasma membrane	81.09	79.4
TraesCS2B01G329100.1	Wheat	golgi, unclear	79.91	79.34
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	80.85	79.17
HORVU2Hr1G064590.1	Barley	cytosol, nucleus, plastid	79.43	79.06
TraesCS2B01G285600.1	Wheat	golgi	79.2	78.82
TraesCS2D01G265800.1	Wheat	cytosol, nucleus, plastid	79.2	78.82
TraesCS2A01G257000.1	Wheat	cytosol, nucleus, plastid	78.96	78.59
TraesCS4B01G355700.1	Wheat	nucleus	79.43	76.19
HORVU4Hr1G086010.2	Barley	plastid	80.85	74.84
CDY15648	Canola	cytosol, mitochondrion	49.88	72.51
HORVU2Hr1G077540.2	Barley	cytosol	80.14	69.18
CDX94649	Canola	endoplasmic reticulum	61.47	65.99
Os03t0576400-00	Rice	nucleus	14.89	57.27
Solyc01g008840.2.1	Tomato	cytosol	19.86	19.13
Solyc10g081150.1.1	Tomato	nucleus	19.39	18.68
Solyc11g062430.1.1	Tomato	cytosol	19.15	18.45

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043248
InterPro:IPR000717	UniProt:K4BY24	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc05g013030.1	EnsemblPlants:Solyc05g013030.1.1
UniParc:UPI0002765AC0	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:6145882..6147153

Molecular Weight (calculated)

47018.9 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.054

Length

423 amino acids

Sequence
(BLAST)

001: MASSYLPATT DSLAQASEAT TPSEAISILY RILENPSSSS EALRIKEQAI FNLSDLLSQE KRAEDLQKLL VQLRPFFSLI PKAKTAKIVN KGIVDAVAKI
101: PGTSDLQITL CKDIVQWARS EKRTFLRQRV EAKLAALLME NKEYSEALTL LSGLIKEVRR LDDKLLLVEI DLLESQLHFS LRNLPKAKAA LTAARTAANA
201: IYVPPAQQGA IDLQSGILHA EEKDYKTAYS YFYEAFEAFN ALENPQALYS LKYMLLCKIM VSQADDVAGI ISTKVGLNYQ GPEVDAMKAV ADAHSKRSLK
301: LFETALRNFK AQLDEDPIVH RHLSSLYDTL MEQNLCRLIE PFSRVEIAHI AELIELPADH VEKKLSQMIL DKKFAGTLDQ GAGCLVIFED PKQDAIYPAT
401: LETISNMGKV VDSLFVRSSK IVA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.