Factsheet for Zm00001d003566_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003567_P001	Maize	cytosol, nucleus, plastid	99.77	99.77
OQU81648	Sorghum	nucleus	96.99	98.36
Os04t0444600-01	Rice	plasma membrane	95.14	96.71
Zm00001d041456_P001	Maize	extracellular	93.98	95.31
TraesCS5A01G524900.1	Wheat	cytosol, nucleus, plastid	92.59	93.9
TraesCS4D01G349100.1	Wheat	cytosol, nucleus, plastid	92.36	93.66
TraesCS2D01G310600.1	Wheat	cytosol, nucleus, plastid	91.44	93.6
TraesCS2B01G329100.1	Wheat	golgi, unclear	91.9	93.19
TraesCS4B01G355700.1	Wheat	nucleus	91.2	89.34
GSMUA_Achr9P29490_001	Banana	cytosol	80.09	87.59
HORVU4Hr1G086010.2	Barley	plastid	92.36	87.31
KRH61975	Soybean	cytosol, nucleus, plastid	84.95	86.97
KRH52636	Soybean	endoplasmic reticulum	84.49	86.49
GSMUA_Achr10P...	Banana	cytosol	81.71	83.65
CDX90170	Canola	cytosol, nucleus, plastid	80.79	83.29
CDY43320	Canola	extracellular	80.79	83.29
KRH04812	Soybean	nucleus	81.02	83.14
AT1G29150.1	Thale cress	cytosol, nucleus, plastid	80.56	83.05
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	80.56	83.05
CDX99790	Canola	cytosol, nucleus, plastid	79.86	82.34
KRH16194	Soybean	cytosol	77.78	82.15
CDY50790	Canola	cytosol	79.4	81.86
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	79.4	81.86
HORVU2Hr1G077540.2	Barley	cytosol	92.82	81.84
Solyc05g013030.1.1	Tomato	plastid	79.4	81.09
PGSC0003DMT400072856	Potato	plastid	79.17	80.85
Os03t0576400-00	Rice	nucleus	19.91	78.18
CDY15648	Canola	cytosol, mitochondrion	49.77	73.88
VIT_12s0034g00940.t01	Wine grape	extracellular	18.98	71.3
CDX94649	Canola	endoplasmic reticulum	59.95	65.74
VIT_15s0048g00130.t01	Wine grape	cytosol	4.86	55.26
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	20.14	19.33
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	20.14	18.75

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.5	UniProt:A0A1D6E9U0	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR000717
InterPro:IPR011990	ProteinID:ONM17161.1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF14	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00084298AD	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d003566	EnsemblPlants:Zm00001d003566_P001	EnsemblPlants:Zm00001d003566_T001	SEG:seg

Description

26S proteasome non-ATPase regulatory subunit 11 homolog

Coordinates

chr2:-:48214656..48216669

Molecular Weight (calculated)

48347.4 Da

IEP (calculated)

5.798

GRAVY (calculated)

-0.106

Length

432 amino acids

Sequence
(BLAST)

001: MQRGVTMSSS MESSYLPATT ESLAQAQEAK DASESISILY RVIQDPSSSA DALRTKEVAI TNLTNYLTKE NRAEELRNLL TQLRPFFAVI PKAKTAKIVR
101: GIIDAVAKIP GTSDLQISLC KEMVEWTRAE KRTFLRQRVE ARLAALLLEN QEYTEALTLL TSLIKEVRRL DDKLLLVDID LLESKLHFSL RNLPKAKASL
201: TAARTAANAI YVPPAQQGTI DLQSGILHAE EKDYKTAYSY FFEAFEAFSA LEDPKAIFSL KYMLLCKIMV NQADDVAGII SSKAGLKYLG PDVDAMKAVA
301: DAYSKRSLKY FETALRDYKS QLEEDPIVHR HLSSLYDTLL EQNLCRLIEP YSRVEIAHIA EMIELPIDHV EKKLSQMILD KKFAGTLDQG AGCLIIFEDS
401: KTEEIFPATL ETISNVGKVV DSLYVRSAKI MA

Best Arabidopsis Sequence Match ( AT1G29150.1 )
(BLAST)

001: MVSYRATTET ISLALEANSS EAITILYQVL EDPSSSPEAI RIKEQAITNL CDRLTEEKRG EDLRKLLTKL RPFFSLIPKA KTAKIVRGII DAVAKIPGTT
101: DLQITLCKEM VEWTRAEKRT FLRQRVEARL AALLMENKEY VEALALLSTL VKEVRRLDDK LLLVDIDLLE SKLHFSLRNL PKAKAALTAA RTAANAIYVP
201: PAQQGTIDLQ SGILHAEEKD YKTGYSYFFE AFESFNALGD PRAVFSLKYM LLCKIMVSQA DDVAGIISSK AGLQYVGPDL DAMKAVADAH SKRSLKLFEN
301: ALRDYKAQLE DDPIVHRHLS SLYDTLLEQN LCRLIEPFSR VEIAHIAELI GLPLDHVEKK LSQMILDKKF AGTLDQGAGC LIIFEDPKAD AIYSATLETI
401: ANMGKVVDSL YVRSAKIMS

Arabidopsis Description

RPN626S proteasome non-ATPase regulatory subunit 11 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LP45]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.